-
Notifications
You must be signed in to change notification settings - Fork 7
Open
Description
Hey there! I had originally used pyscenic for C. elegans data using my single cell RNA seq data. However, I want to incorporate my lab's ChIP-Seq data that hasn't been published yet. When reading the documentation I found that ChIP-Seq data was only mentioned in regards to track and BigWig files. I'm not particularly familiar with these formats. Would you perhaps have some suggestions/references on how to incorporate my lab's ChIP-Seq data into the appropriate format? I attached below the ChIP-Seq file I am working with and trying to include in my analysis.
Thank you!
chr | start | stop | name | score | strand | signalval | pval (-log10) | qval (-log10) | peak | chr | TSS_window_start | TSS_window_stop | GeneID | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I | 0 | 496 | MACS2_callpeaks_on_merged_peak_1 | 123 | . | 1.50088 | 15.22856 | 12.3319 | 282 | I | 0 | 8909 | WBGene00023193 | |
I | 10034962 | 10035283 | MACS2_callpeaks_on_merged_peak_256 | 34 | . | 1.52447 | 5.56146 | 3.40073 | 133 | I | 10025174 | 10035174 | WBGene00008665 | |
I | 10034962 | 10035283 | MACS2_callpeaks_on_merged_peak_256 | 34 | . | 1.52447 | 5.56146 | 3.40073 | 133 | I | 10028190 | 10038190 | WBGene00196146 | |
I | 10034962 | 10035283 | MACS2_callpeaks_on_merged_peak_256 | 34 | . | 1.52447 | 5.56146 | 3.40073 | 133 | I | 10029816 | 10039816 | WBGene00003564 | |
I | 10034962 | 10035283 | MACS2_callpeaks_on_merged_peak_256 | 34 | . | 1.52447 | 5.56146 | 3.40073 | 133 | I | 10032840 | 10042840 | WBGene00198497 | |
I | 10034962 | 10035283 | MACS2_callpeaks_on_merged_peak_256 | 34 | . | 1.52447 | 5.56146 | 3.40073 | 133 | I | 10035223 | 10045223 | WBGene00196679 | |
I | 10121940 | 10122293 | MACS2_callpeaks_on_merged_peak_257 | 61 | . | 1.67697 | 8.58683 | 6.15372 | 227 | I | 10112061 | 10122061 | WBGene00013704 | |
I | 10121940 | 10122293 | MACS2_callpeaks_on_merged_peak_257 | 61 | . | 1.67697 | 8.58683 | 6.15372 | 227 | I | 10112159 | 10122159 | WBGene00013704 |
Metadata
Metadata
Assignees
Labels
No labels