From 78bf2a36d146134f9f4cc47582e9a03f48eb9a5b Mon Sep 17 00:00:00 2001 From: Jeremy Leipzig Date: Wed, 1 Sep 2021 17:03:47 -0600 Subject: [PATCH] Update README.md provide workbench links --- rnaseq/README.md | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/rnaseq/README.md b/rnaseq/README.md index 16de92ca..06af4e0f 100644 --- a/rnaseq/README.md +++ b/rnaseq/README.md @@ -118,6 +118,11 @@ docker run --rm -v $path_to_data:/data -t broadinstitute/gtex_rnaseq:V8 \ --threads 4" ``` +### Running on a cloud workbench +The following cloud-native workbench platforms support running the GTEx RNA-seq pipeline +- [Terra](https://portal.firecloud.org/?return=terra#methods/broadinstitute_gtex/rnaseq_fastq_star_rsem_rnaseqc_v1-2_BETA/7) +- [Truwl](https://truwl.com/workflows/library/GTEx/) + #### Aggregating outputs Sample-level outputs in GCT format can be concatenated using `combine_GCTs.py`: ```