diff --git a/adam/nih-bd2k-112015-poster/nih-bd2k-112015-poster.tex b/adam/nih-bd2k-112015-poster/nih-bd2k-112015-poster.tex index f1cf3a1..5f1b931 100644 --- a/adam/nih-bd2k-112015-poster/nih-bd2k-112015-poster.tex +++ b/adam/nih-bd2k-112015-poster/nih-bd2k-112015-poster.tex @@ -28,13 +28,13 @@ \hspace{92pt} \fontsize{1cm}{1em} Frank~Austin~Nothaft$^{1,2,\star}$, Arun~Ahuja$^3$, Timothy~Danford$^{1,4}$, -Jey~Kottalam$^1$, Matt~Massie$^1$, Audrey~Musselman-Brown$^5$, Beau~Norgeot$^5$, -Ravi~Pandya$^6$, Hannes~Schmidt$^5$, Eric~Tu$^1$, +Michael~Heuer$^1$, Jey~Kottalam$^1$, Matt~Massie$^1$, Audrey~Musselman-Brown$^5$, +Beau~Norgeot$^{5,6}$, Ravi~Pandya$^7$, Justin~Paschall$^1$, Hannes~Schmidt$^5$, -\hspace{100pt} Ryan~Williams$^3$, +\hspace{100pt} Eric~Tu$^1$, Ryan~Williams$^3$, Carl~Yeksigian$^4$, Michael~Linderman$^3$, Jeff~Hammerbacher$^3$, -\textbf{Benedict~Paten}$^{5,\star}$, Uri~Laserson$^7$, David~Haussler$^5$, -Anthony~D.~Joseph$^1$, David~A.~Patterson$^{1,2}$ +\textbf{Benedict~Paten}$^{5,\star}$, Uri~Laserson$^{3,9}$, Gaddy Getz$^{10}$, +David~Haussler$^5$, Anthony~D.~Joseph$^1$, David~A.~Patterson$^{1,2}$ \hspace{100pt} $^1$AMPLab, University of California, Berkeley, CA, @@ -42,12 +42,15 @@ $^3$Icahn School of Medicine at Mount Sinai, New York, NY, \hspace{100pt} -$^4$GenomeBridge, Cambridge, MA, +$^4$Tamr, Inc., Cambridge, MA, $^5$Genome Informatics Lab, University of Californa, Santa Cruz, CA, +$^6$Pharmaceutical Science and Pharmacogenomics, University of California, San Francisco, CA \hspace{100pt} -$^6$Microsoft Research, Redmond, WA, -$^7$Cloudera, Inc., San Francisco, CA +$^7$Microsoft Research, Redmond, WA, +$^8$GenomeBridge, Cambridge, MA, +$^9$Cloudera, Inc., San Francisco, CA, +$^{10}$The Broad Institute of MIT and Harvard, Cambridge, MA \hspace{100pt} \fontsize{1cm}{1em} @@ -206,15 +209,14 @@ \item We evaluated ADAM by replacing the GATK ``Best Practices'' pre-processing stages with an ADAM based reimplementation \item GATK was run on a single \texttt{i2.8xlarge} node, ADAM was run on 16 -\texttt{r3.4xlarge} nodes. -\item The ADAM-based pipeline is $3.55\times$ faster, and $2\times$ cheaper. -\item The two pipelines generate statistically equivalent variant calls: -\begin{itemize} -\item During this process, we identified two bugs in the GATK/Picard. +\texttt{r3.4xlarge} nodes +\item The ADAM-based pipeline is $3.55\times$ faster, and $2\times$ cheaper +\item The two pipelines generate statistically equivalent variant calls +\end{itemize} + +During this process, we identified two bugs in the GATK/Picard. Both of these issues are caused by sort order invariants necessitated by programming at a lower level of abstraction. -\end{itemize} -\end{itemize} \end{minipage} \begin{minipage}{0.03\linewidth} \hfill