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NEWS

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@@ -8,6 +8,17 @@ Changes affecting specific commands:
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- New experimental plugin for scoring variants and assess site noisiness from a large number of unaffected
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parental samples
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* bcftools query
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- The functions used in -i/-e filtering expressions (such as SUM, MEDIAN, etc) can be
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now used in formatting expressions (#2271).
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If the VCF contains INFO/AD and FORMAT/AD, try:
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bcftools query test.vcf -f '%CHROM:%POS \t [ %AD] \t [ %sSUM(FMT/AD)]'
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bcftools query test.vcf -f '%CHROM:%POS \t [ %AD] \t [ %SUM(FMT/AD)]'
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bcftools query test.vcf -f '%CHROM:%POS \t [ %AD] \t %SUM(FMT/AD)'
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bcftools query test.vcf -f '%CHROM:%POS \t [ %AD] \t %SUM(INFO/AD)'
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* bcftools +trio-dnm2
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- Fix a problem with --strictly-novel option which would neglect the presence of the apparent de novo

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