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Change test output filenames [minor]
Output SAM files use "*.sam_" to avoid being picked up as input files by test_view()'s glob(). Oops.
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test/test.pl

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Original file line numberDiff line numberDiff line change
@@ -264,7 +264,7 @@ sub test_view
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# Java pre-made CRAM -> SAM
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my $jcram = "${base}_java.cram";
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if (-e $jcram) {
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my $jsam = "${base}_java.tmp.sam";
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my $jsam = "${base}_java.tmp.sam_";
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testv "./test_view -i reference=$ref $jcram > $jsam";
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testv "./compare_sam.pl -nomd $sam $jsam";
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}

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