refactor(qprofiler2): add bad option check for longread

[newellf]

Long read only works with BAM input files, adding code to throw exception if incorrect file format

Description

Please include a summary of the change and which issue is fixed. Please also include relevant motivation and context. List any dependencies that are required for this change.

How Has This Been Tested?

Added junit tests

Are WDL Updates Required?

No

Checklist:

• My code follows the style guidelines of this project
• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to the documentation
• My changes generate no new warnings
• I have added tests that prove my fix is effective or that my feature works
• [ X New and existing unit tests pass locally with my changes

[holmeso]

LGTM