Qsv matefile #375
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Qsv matefile #375
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Fix file naming of matepair file tmp files from _ to _xxx_ due to chrUn_ scaffold contigs in GRCh38
Committing test file that was not included in previous commit.
felicity731
approved these changes
Sep 17, 2024
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Description
Bugfix. For GRCh38, temporary matepair files names separated reference name from file ending with an underscore, but scaffold contigs in GRCh38 also have an underscore, so mate pairs were incorrectly matched. Changed file name to include "xxx"
Type of change
How Has This Been Tested?
Added unit tests and ran qsv for previously failing sample
Are WDL Updates Required?
sv.wdl will need to be updated to a new release of adamajava to include this change.
Checklist: