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Copy file name to clipboardExpand all lines: README.md
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7. Open the website in your favorite browser at:
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[http://127.0.0.1:4000/](http://127.0.0.1:4000/)
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## How can I generate the PDFs for the protocols locally?
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The protocols can be extracted to PDFs in 2 versions: one for participants/pupils with only the instructions, one for the instructors/teachers with instructions and details
Copy file name to clipboardExpand all lines: _events/2019-03-10-first_public_workshop.md
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On the 31st of March, we hold our first public workshop for the [BeerDEcoded project]({% link _projects/beerdecoded.md %}) in Freiburg. Some students and external people participated to this event: 16 peoples in total, including us.
We started the day with a short introduction to beer, yeast, DNA and of course lab safety. Then all participants took part in some fun games on pipetting and centrifuging to make them more comfortable with both.
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Then DNA extraction went well. In parallel, we started our DNA sequencing protocol using a previously extracted DNA from Rothaus, another local beer. Here we encountered several problems during the library preparation and the sequencing likely due to mistakes in the protocols and reuse of old flowcell. We will improve the protocol to fix the issues.
Copy file name to clipboardExpand all lines: _events/2019-06-13-gcc.md
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During the first day of GCC, we demonstrated how to sequence the DNA of beer (["Beer Decoded, Here and Now!"](https://gcc2019.sched.com/event/QZyL/beer-decoded-here-and-now)):
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Teresa gave also a talk about ["Street Science Community: make science tangible & accessible by bringing it to the 'street' with open science workshops"](https://gcc2019.sched.com/event/PSfv/street-science-community-make-science-tangible-accessible-by-bringing-it-to-the-street-with-open-science-workshops) during the plenary session of Wednesday afternoon.
Copy file name to clipboardExpand all lines: _events/2019-07-22-pupils_workshop.md
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On the 22st to 23rd of March, we held our first workshop with high school pupils for the [BeerDEcoded project]({% link _projects/beerdecoded.md %}) in Freiburg. Four pupils and one external participant made us a group of 10 people in total.
We started the day in the biology department at the University of Freiburg with a short introduction to beer, yeast, DNA and of course lab safety. We split the participants into two groups to bring in some competition: Who will extract and purify DNA the best? With some games the pupils learned to pipette accurately, organize the space in a centrifuge correctly and to enjoy the stimulation of a vortex mixer.
These skills combined allowed us to reduce 2 bottles of beer to a drop of liquid, hopefully containing as much DNA as possible and minimal contamination. Remember the two groups? Well, at the end of the day we definitely learned something: Disciplined lab work does make a difference, we had a clear winner!
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At the following day we met again for the bioinformatics part - analyzing the data. Unfortunately, this had to be done with data from a different DNA extraction as we were lacking some necessary consumables. Looking at a mysterious FASTQ file, we worked together the decipher what was in front of us, benefiting from the crisp knowledge that pupils bring from school. The analysis with a Galaxy workflow not only allowed to identify a familiar sounding "Saccharomyces cerevisiae" among other species of yeast, but also to introduce the pupils in the work of a bioinformatician and the greater picture of the science behind BeerDeCoded.
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