From af0dee61f8e6577cd4a111991aa8d97ca6291c49 Mon Sep 17 00:00:00 2001
From: wtclarke <william.clarke@ndcn.ox.ac.uk>
Date: Tue, 31 Oct 2023 13:58:56 +0000
Subject: [PATCH 1/2] Enable github ci workflow

---
 .github/requirements.yml      |  3 +++
 .github/workflows/push_pr.yml | 42 +++++++++++++++++++++++++++++++++++
 2 files changed, 45 insertions(+)
 create mode 100644 .github/requirements.yml
 create mode 100644 .github/workflows/push_pr.yml

diff --git a/.github/requirements.yml b/.github/requirements.yml
new file mode 100644
index 00000000..27138433
--- /dev/null
+++ b/.github/requirements.yml
@@ -0,0 +1,3 @@
+dependencies:
+ - flake8
+ - pytest
\ No newline at end of file
diff --git a/.github/workflows/push_pr.yml b/.github/workflows/push_pr.yml
new file mode 100644
index 00000000..ab77761b
--- /dev/null
+++ b/.github/workflows/push_pr.yml
@@ -0,0 +1,42 @@
+name: Run code tests on push and pull requests
+on:
+  push:
+  pull_request:
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+jobs:
+  tests:
+    name: Code tests (Python ${{ matrix.python-version }}, ${{ matrix.os }})
+    runs-on: ${{ matrix.os }}
+    strategy:
+        matrix:
+            os: ["ubuntu-latest"]
+            python-version: ["3.8", "3.9", "3.10", "3.11"]
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          submodules: true
+          lfs: true
+      - uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+          activate-environment: test
+          environment-file: .github/requirements.yml
+          auto-activate-base: false
+          channels: conda-forge
+      - shell: bash -l {0}
+        run: |
+          conda info
+          conda list
+      - name: Lint
+        shell: bash -l {0}
+        run: |
+            python -m flake8 pypulseq
+      - name: Run pytest
+        shell: bash -l {0}
+        run: |
+            pip install .
+            pytest pypulseq/tests

From 1acb949ccf7adcdbc848335b32e432a502b11736 Mon Sep 17 00:00:00 2001
From: wtclarke <william.clarke@ndcn.ox.ac.uk>
Date: Tue, 31 Oct 2023 14:03:56 +0000
Subject: [PATCH 2/2] Disable lint step for now

---
 .github/workflows/push_pr.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/push_pr.yml b/.github/workflows/push_pr.yml
index ab77761b..aa559d7b 100644
--- a/.github/workflows/push_pr.yml
+++ b/.github/workflows/push_pr.yml
@@ -31,10 +31,10 @@ jobs:
         run: |
           conda info
           conda list
-      - name: Lint
-        shell: bash -l {0}
-        run: |
-            python -m flake8 pypulseq
+      # - name: Lint
+      #   shell: bash -l {0}
+      #   run: |
+      #       python -m flake8 pypulseq
       - name: Run pytest
         shell: bash -l {0}
         run: |