diff --git a/lib/app.js b/lib/app.js
index 9b19455c..af760e00 100644
--- a/lib/app.js
+++ b/lib/app.js
@@ -30,17 +30,19 @@ class App {
 
     // Other
     this.testrpcProcess = null;                  // ref to testrpc server we need to close on exit
-    this.events = null;                           // ref to string array loaded from 'allFiredEvents'
+    this.events = null;                          // ref to string array loaded from 'allFiredEvents'
     this.testsErrored = null;                    // flag set to non-null if truffle tests error
     this.coverage = new CoverageMap();           // initialize a coverage map
     this.originalArtifacts = [];                 // Artifacts from original build (we swap these in)
     this.skippedFolders = [];
+    this.forceParseFolders = [];
 
     // Config
     this.config = config || {};
     this.workingDir = config.dir || '.';         // Relative path to contracts folder
     this.accounts = config.accounts || 35;       // Number of accounts to testrpc launches with
     this.skipFiles = config.skipFiles || [];     // Which files should be skipped during instrumentation
+    this.forceParse = config.forceParse || [];   // Which files should be force parsed during instrumentation
     this.norpc = config.norpc || false;          // Launch testrpc-sc internally?
     this.port = config.port || 8555;             // Port testrpc should listen on
     this.buildDirPath = config.buildDirPath || '/build/contracts' // Build directory path for compiled smart contracts
@@ -81,6 +83,12 @@ class App {
           this.skippedFolders.push(item);
       });
 
+      // Identify folders to force parse
+      this.forceParse.forEach(item => {
+        if (path.extname(item) !== '.sol')
+          this.forceParseFolders.push(item);
+      });
+
       files = files.map(file => `${this.workingDir}/${file}`);
       shell.mkdir(this.coverageDir);
       shell.cp('-R', files, this.coverageDir);
@@ -143,6 +151,7 @@ class App {
   instrumentTarget() {
     this.skipFiles = this.skipFiles.map(contract => `${this.coverageDir}/contracts/${contract}`);
     this.skipFiles.push(`${this.coverageDir}/contracts/Migrations.sol`);
+    this.forceParse = this.forceParse.map(contract => `${this.coverageDir}/contracts/${contract}`);
 
     const instrumentedFiles = [];
     let currentFile;
@@ -155,7 +164,7 @@ class App {
 
           const contractPath = this.platformNeutralPath(file);
           const working = this.workingDir.substring(1);
-          const canonicalPath = contractPath.split('/coverageEnv').join(working);
+          const canonicalPath = file.split('/coverageEnv').join(working);
           const contract = fs.readFileSync(contractPath).toString();
           const instrumentedContractInfo = getInstrumentedVersion(contract, canonicalPath);
           fs.writeFileSync(contractPath, instrumentedContractInfo.contract);
@@ -178,8 +187,11 @@ class App {
       .forEach(file => {
 
         // Skip post-processing of skipped files
-        if (this.deepSkip && (this.skipFiles.includes(file) || this.inSkippedFolder(file))) return;
-
+        if (this.deepSkip && (this.skipFiles.includes(file) || this.inSkippedFolder(file)) && !(this.forceParse.includes(file) || this.inForceParseFolder(file))) {
+          this.log('Skipping post-processing of ', file);
+          return;
+        } 
+        this.log('Post-processing ', file);
         const contractPath = this.platformNeutralPath(file);
         const contract = fs.readFileSync(contractPath).toString();
         const contractProcessed = preprocessor.run(contract);
@@ -415,6 +427,21 @@ class App {
     return shouldSkip;
   }
 
+  /**
+   * Determines if a file is in a folder marked force parse.
+   * @param  {String} file file path
+   * @return {Boolean}
+   */
+  inForceParseFolder(file){
+    let shouldParse;
+    this.forceParseFolders.forEach(folderToParse => {
+      folderToParse = `${this.coverageDir}/contracts/${folderToParse}`;
+      if (file.indexOf(folderToParse) === 0)
+        shouldParse = true;
+    });
+    return shouldParse;
+  }
+
   /**
    * Allows config to turn logging off (for CI)
    * @param {Boolean} isSilent
@@ -463,4 +490,4 @@ class App {
   }
 }
 
-module.exports = App;
+module.exports = App;
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