diff --git a/_data/sidebars/tech.yml b/_data/sidebars/tech.yml index 03f16d29c..b6b012867 100644 --- a/_data/sidebars/tech.yml +++ b/_data/sidebars/tech.yml @@ -9,7 +9,7 @@ subitems: subitems: - title: Contributing introduction url: /tech/contributing - - title: Contributing to SEEK + - title: Contributing to FAIRDOM-SEEK url: /tech/contributing-to-seek - title: Reporting Bugs and raising Feature Requests url: /tech/reporting-bugs-and-features @@ -19,13 +19,13 @@ subitems: url: /tech/style-guide - title: Installing subitems: - - title: Installing SEEK + - title: Installing FAIRDOM-SEEK url: /tech/install - - title: Installing SEEK for other Linux distributions + - title: Installing FAIRDOM-SEEK for other Linux distributions url: /tech/other-distributions - - title: Installing SEEK in a production environment + - title: Installing FAIRDOM-SEEK in a production environment url: /tech/install-production - - title: Installing SEEK under a sub URI + - title: Installing FAIRDOM-SEEK under a sub URI url: /tech/install-on-suburi - title: Setting up the Apache Solr Search Engine url: /tech/setting-up-solr @@ -45,15 +45,15 @@ subitems: url: /tech/docker/building-images - title: Administering subitems: - - title: Administration of SEEK + - title: Administration of FAIRDOM-SEEK url: /tech/administration - title: Providing your own Assay and Technology types url: /tech/assay-types - - title: Backing up SEEK + - title: Backing up FAIRDOM-SEEK url: /tech/backups - title: Upgrading subitems: - - title: Upgrading SEEK + - title: Upgrading FAIRDOM-SEEK url: /tech/upgrading - title: Upgrades between earlier versions url: /tech/earlier-upgrades @@ -61,7 +61,7 @@ subitems: url: /tech/investigation-checksum # - title: openSEEK # url: /tech/openseek - - title: Configuring SEEK for Virtuoso + - title: Configuring FAIRDOM-SEEK for Virtuoso url: /tech/setting-up-virtuoso # - title: Using Teaspoon # url: /tech/using-teaspoon diff --git a/_data/sidebars/userguide.yml b/_data/sidebars/userguide.yml index ea61ea007..9169f317b 100644 --- a/_data/sidebars/userguide.yml +++ b/_data/sidebars/userguide.yml @@ -8,13 +8,13 @@ subitems: - title: Browsing content url: /help/user-guide/browsing - title: Profile - description: Registering and logging into SEEK, managing your account and identities, editing your profile. + description: Registering and logging into FAIRDOM-SEEK, managing your account and identities, editing your profile. subitems: - title: Registration and Login subitems: - - title: Registering in SEEK + - title: Registering in FAIRDOM-SEEK url: /help/user-guide/registering - - title: Logging into SEEK via LS Login + - title: Logging into FAIRDOM-SEEK via LS Login url: /help/user-guide/aai - title: Managing your identities/alternative login methods url: /help/user-guide/managing-identities @@ -68,7 +68,7 @@ subitems: subitems: - title: Introduction to the ISA structure subitems: - - title: Visualising ISA structure in SEEK + - title: Visualising ISA structure in FAIRDOM-SEEK url: /help/user-guide/isa-overview - title: Generating the ISA structure url: /help/user-guide/generating-the-isa-structure @@ -102,9 +102,9 @@ subitems: - #hr: true title: Assets - description: Adding different types of assets to SEEK, creating new asset versions. + description: Adding different types of assets to FAIRDOM-SEEK, creating new asset versions. subitems: - - title: Adding assets (data, models, SOPs, publications) to SEEK + - title: Adding assets (data, models, SOPs, publications) url: /help/user-guide/adding-assets - title: Data files subitems: @@ -146,7 +146,7 @@ subitems: title: Samples description: Creating and browsing samples, and samples in ISA-JSON compliant experiments. subitems: - - title: Introduction + - title: Introduction to samples url: /help/user-guide/samples - title: Sample types description: Creating and browsing samples, and samples in ISA-JSON compliant experiments. @@ -179,16 +179,16 @@ subitems: - #hr: true title: Integrations - description: Using SEEK and openBIS or Copasi, compliance with ISA-JSON schemas. + description: Using FAIRDOM-SEEK and openBIS or Copasi, compliance with ISA-JSON schemas. subitems: - - title: Using SEEK with openBIS + - title: Using FAIRDOM-SEEK with openBIS url: /help/user-guide/openbis - - title: Using Copasi with SEEK + - title: Using Copasi with FAIRDOM-SEEK url: /help/user-guide/copasi-button - #hr: true title: User guide for API - description: Introduction to the SEEK API. + description: Introduction to the FAIRDOM-SEEK API. subitems: - title: API Introduction url: /help/user-guide/api @@ -200,13 +200,13 @@ subitems: url: /help/archived - title: Data and model annotation subitems: - - title: Minimum metadata guidelines for SEEK + - title: Minimum metadata guidelines for FAIRDOM-SEEK url: /help/metadata-guidelines - title: A Quick guide to using the ISA structure url: /help/isa-guide - title: ISA best practice url: /help/isa-best-practice - - title: "Transcriptomics: guidelines for SEEK templates" + - title: "Transcriptomics: guidelines for FAIRDOM-SEEK templates" url: /help/transcriptomics-guidelines - title: Proteomics guidelines url: /help/proteomics-guidelines diff --git a/help/metadata-guidelines.md b/help/metadata-guidelines.md index 0ffa3a883..2c5527dc1 100644 --- a/help/metadata-guidelines.md +++ b/help/metadata-guidelines.md @@ -1,5 +1,5 @@ --- -title: Minimum metadata guidelines for SEEK +title: Minimum metadata guidelines for FAIRDOM-SEEK redirect_from: "/metadata-guidelines.html" --- diff --git a/help/transcriptomics-guidelines.md b/help/transcriptomics-guidelines.md index aef84c071..d74c3d233 100644 --- a/help/transcriptomics-guidelines.md +++ b/help/transcriptomics-guidelines.md @@ -1,5 +1,5 @@ --- -title: "Transcriptomics: Guidelines for SEEK templates" +title: "Transcriptomics: Guidelines for FAIRDOM-SEEK templates" redirect_from: "/transcriptomics-guidelines.html" --- diff --git a/help/user-guide/adding-assets.md b/help/user-guide/adding-assets.md index d245611b3..a07c5815e 100644 --- a/help/user-guide/adding-assets.md +++ b/help/user-guide/adding-assets.md @@ -1,5 +1,5 @@ --- -title: Adding assets (Data, Models, SOPs, Presentations, Documents) to SEEK +title: Adding assets (Data, Models, SOPs, Presentations, Documents) to FAIRDOM-SEEK --- To add a data file to SEEK, select Create from the menu bar, and select the appropriate asset from the drop down menu. diff --git a/help/user-guide/browsing.md b/help/user-guide/browsing.md index bc4394243..00843bbd7 100644 --- a/help/user-guide/browsing.md +++ b/help/user-guide/browsing.md @@ -1,5 +1,5 @@ --- -title: Browsing content on SEEK +title: Browsing content on FAIRDOM-SEEK --- diff --git a/help/user-guide/copasi-button.md b/help/user-guide/copasi-button.md index fa38bf944..8e61b2657 100644 --- a/help/user-guide/copasi-button.md +++ b/help/user-guide/copasi-button.md @@ -1,5 +1,5 @@ --- -title: Using Copasi in SEEK +title: Using Copasi in FAIRDOM-SEEK --- You can download a public SBML format **model** to a locally installed Copasi application and start the simulation in Copasi. diff --git a/help/user-guide/general-attributes.md b/help/user-guide/general-attributes.md index 72c67143d..6582efb98 100644 --- a/help/user-guide/general-attributes.md +++ b/help/user-guide/general-attributes.md @@ -1,5 +1,5 @@ --- -title: Generic linking variables in SEEK +title: Generic linking variables in FAIRDOM-SEEK redirect_from: "/help/user-guide/generic-linking-variables.html" --- diff --git a/help/user-guide/openbis.md b/help/user-guide/openbis.md index 061653bf9..8bbd50066 100644 --- a/help/user-guide/openbis.md +++ b/help/user-guide/openbis.md @@ -1,5 +1,5 @@ --- -title: Using SEEK with openBIS +title: Using FAIRDOM-SEEK with openBIS --- ## Enabling openBIS in SEEK diff --git a/help/user-guide/registering.md b/help/user-guide/registering.md index 0bf76b730..9fd001d20 100644 --- a/help/user-guide/registering.md +++ b/help/user-guide/registering.md @@ -1,5 +1,5 @@ --- -title: Registering in SEEK +title: Registering in FAIRDOM-SEEK --- In order to register yourself in SEEK, you need to click the Register button in the top right hand corner of SEEK. diff --git a/tech/administration.md b/tech/administration.md index f4aacb897..dc8e890f6 100644 --- a/tech/administration.md +++ b/tech/administration.md @@ -1,5 +1,5 @@ --- -title: Administration of SEEK +title: Administration of FAIRDOM-SEEK redirect_from: "/administration.html" --- diff --git a/tech/backups.md b/tech/backups.md index 74995467e..14e527aa1 100644 --- a/tech/backups.md +++ b/tech/backups.md @@ -1,5 +1,5 @@ --- -title: Backing up SEEK +title: Backing up FAIRDOM-SEEK redirect_from: "/backups.html" --- diff --git a/tech/contributing-to-seek.md b/tech/contributing-to-seek.md index 4d743cf75..d1c1fe518 100644 --- a/tech/contributing-to-seek.md +++ b/tech/contributing-to-seek.md @@ -1,5 +1,5 @@ --- -title: Contributing to SEEK +title: Contributing to FAIRDOM-SEEK redirect_from: "/contributing-to-seek.html" --- diff --git a/tech/install-on-suburi.md b/tech/install-on-suburi.md index 5f9149f9e..1a58372f1 100644 --- a/tech/install-on-suburi.md +++ b/tech/install-on-suburi.md @@ -1,5 +1,5 @@ --- -title: Installing SEEK under a sub URI +title: Installing FAIRDOM-SEEK under a sub URI redirect_from: "/install-on-suburi.html" --- diff --git a/tech/install-production.md b/tech/install-production.md index 2defc0fcf..cc46f7f36 100644 --- a/tech/install-production.md +++ b/tech/install-production.md @@ -1,5 +1,5 @@ --- -title: Installing SEEK in a production environment +title: Installing FAIRDOM-SEEK in a production environment redirect_from: "/install-production.html" --- diff --git a/tech/install.md b/tech/install.md index 0105a5684..470c10e6b 100644 --- a/tech/install.md +++ b/tech/install.md @@ -1,5 +1,5 @@ --- -title: Installing SEEK +title: Installing FAIRDOM-SEEK redirect_from: "/install.html" --- diff --git a/tech/other-distributions.md b/tech/other-distributions.md index a2aa64f02..feade50cd 100644 --- a/tech/other-distributions.md +++ b/tech/other-distributions.md @@ -1,5 +1,5 @@ --- -title: Installing SEEK for other Linux distributions +title: Installing FAIRDOM-SEEK for other Linux distributions redirect_from: "/other-distributions.html" --- diff --git a/tech/setting-up-virtuoso.md b/tech/setting-up-virtuoso.md index 926b6dcc8..4acb41519 100644 --- a/tech/setting-up-virtuoso.md +++ b/tech/setting-up-virtuoso.md @@ -1,5 +1,5 @@ --- -title: Configuring SEEK for Virtuoso +title: Configuring FAIRDOM-SEEK for Virtuoso redirect_from: "/setting-up-virtuoso.html" ---