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@DeepGraphLearning

MilaGraph

Research group led by Prof. Jian Tang at Mila-Quebec AI Institute (https://mila.quebec/) focusing on graph representation learning and graph neural networks.

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  1. torchdrug torchdrug Public

    A powerful and flexible machine learning platform for drug discovery

    Python 1.6k 214

  2. ULTRA ULTRA Public

    A foundation model for knowledge graph reasoning

    Python 580 79

  3. GMNN GMNN Public

    Graph Markov Neural Networks

    Python 410 101

  4. GearNet GearNet Public

    GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

    Python 304 32

  5. NBFNet NBFNet Public

    Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)

    Python 228 31

  6. ConfGF ConfGF Public

    Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).

    Python 170 38

Repositories

Showing 10 of 52 repositories
  • Math80648A_2025A Public Forked from AndyJZhao/Math60630A_2024A
    DeepGraphLearning/Math80648A_2025A’s past year of commit activity
    SCSS 0 2 0 0 Updated Nov 17, 2025
  • MATH60629A_2025A Public Forked from denafiroozi/Machine-Learning-I
    DeepGraphLearning/MATH60629A_2025A’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Nov 11, 2025
  • HAX Public

    Overcoming Long-Context Limitations of State-Space Models via Context-Dependent Sparse Attention (NeurIPS 2025)

    DeepGraphLearning/HAX’s past year of commit activity
    Python 11 0 0 0 Updated Sep 30, 2025
  • GearNet Public

    GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

    DeepGraphLearning/GearNet’s past year of commit activity
    Python 304 MIT 32 23 1 Updated Jun 13, 2025
  • GearBind Public

    Pretrainable geometric graph neural network for antibody affinity maturation

    DeepGraphLearning/GearBind’s past year of commit activity
    Python 66 Apache-2.0 9 8 0 Updated Mar 18, 2025
  • scCello Public

    [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model

    DeepGraphLearning/scCello’s past year of commit activity
    Python 21 5 1 1 Updated Mar 12, 2025
  • ProteinTutorial_AAAI2025 Public

    https://deepgraphlearning.github.io/ProteinTutorial_AAAI2025/

    DeepGraphLearning/ProteinTutorial_AAAI2025’s past year of commit activity
    CSS 6 MIT 0 0 0 Updated Feb 27, 2025
  • ULTRA Public

    A foundation model for knowledge graph reasoning

    DeepGraphLearning/ULTRA’s past year of commit activity
    Python 580 MIT 79 3 0 Updated Feb 3, 2025
  • GraphAny Public

    GraphAny: Fully-inductive Node Classification on Arbitrary Graphs

    DeepGraphLearning/GraphAny’s past year of commit activity
    Python 148 MIT 16 2 1 Updated Feb 3, 2025
  • S3F Public

    Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)

    DeepGraphLearning/S3F’s past year of commit activity
    Python 46 MIT 4 4 0 Updated Dec 3, 2024
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