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@DeepGraphLearning

MilaGraph

Research group led by Prof. Jian Tang at Mila-Quebec AI Institute (https://mila.quebec/) focusing on graph representation learning and graph neural networks.

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  1. torchdrug torchdrug Public

    A powerful and flexible machine learning platform for drug discovery

    Python 1.5k 212

  2. ULTRA ULTRA Public

    A foundation model for knowledge graph reasoning

    Python 565 76

  3. GMNN GMNN Public

    Graph Markov Neural Networks

    Python 411 101

  4. GearNet GearNet Public

    GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

    Python 299 32

  5. NBFNet NBFNet Public

    Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)

    Python 226 31

  6. ConfGF ConfGF Public

    Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).

    Python 169 38

Repositories

Showing 10 of 52 repositories
  • Math80648A_2025A Public Forked from AndyJZhao/Math60630A_2024A
    DeepGraphLearning/Math80648A_2025A’s past year of commit activity
    SCSS 0 2 0 0 Updated Sep 30, 2025
  • HAX Public

    Overcoming Long-Context Limitations of State-Space Models via Context-Dependent Sparse Attention (NeurIPS 2025)

    DeepGraphLearning/HAX’s past year of commit activity
    Python 4 0 0 0 Updated Sep 30, 2025
  • MATH60629A_2025A Public Forked from denafiroozi/Machine-Learning-I
    DeepGraphLearning/MATH60629A_2025A’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Sep 29, 2025
  • GearNet Public

    GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

    DeepGraphLearning/GearNet’s past year of commit activity
    Python 299 MIT 32 23 1 Updated Jun 13, 2025
  • GearBind Public

    Pretrainable geometric graph neural network for antibody affinity maturation

    DeepGraphLearning/GearBind’s past year of commit activity
    Python 63 Apache-2.0 8 8 0 Updated Mar 18, 2025
  • scCello Public

    [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model

    DeepGraphLearning/scCello’s past year of commit activity
    Python 20 3 1 1 Updated Mar 12, 2025
  • ProteinTutorial_AAAI2025 Public

    https://deepgraphlearning.github.io/ProteinTutorial_AAAI2025/

    DeepGraphLearning/ProteinTutorial_AAAI2025’s past year of commit activity
    CSS 6 MIT 0 0 0 Updated Feb 27, 2025
  • ULTRA Public

    A foundation model for knowledge graph reasoning

    DeepGraphLearning/ULTRA’s past year of commit activity
    Python 565 MIT 76 2 0 Updated Feb 3, 2025
  • GraphAny Public

    GraphAny: Fully-inductive Node Classification on Arbitrary Graphs

    DeepGraphLearning/GraphAny’s past year of commit activity
    Python 146 MIT 16 2 1 Updated Feb 3, 2025
  • S3F Public

    Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)

    DeepGraphLearning/S3F’s past year of commit activity
    Python 43 MIT 4 3 0 Updated Dec 3, 2024
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