feat: Adding single sipm channel hits bank

etc/bankdefs/hipo4/alert.json

@@ -103,6 +103,62 @@
         "info": "id of cluster to which the hit was associated"
       }
     ]
+  },{
+    "name": "ATOF::calibhits",
+    "group": 22500,
+    "item": 23,
+    "info": "ATOF hits in single sipm channels",
+    "entries": [		
+      {
+        "name": "id",
+        "type": "S",
+        "info": "hit id"
+      }, {
+        "name": "sector",
+        "type": "I",
+        "info": "atof sector"
+      }, {
+        "name": "layer",
+        "type": "I",
+        "info": "atof layer"			    
+      },{
+        "name": "component",
+        "type": "I",
+        "info": "atof component" 
+      },{
+        "name": "order",
+        "type": "I",
+        "info": "atof order" 
+      },{
+        "name": "time",
+        "type": "F",
+        "info": "time in ns"
+      },{
+        "name": "x",
+        "type": "F",
+        "info": "x position in mm"
+      }, {
+        "name": "y",
+        "type": "F",
+        "info": "y position in mm"
+      }, {
+        "name": "z",
+        "type": "F",
+        "info": "z position in mm"
+      },{
+        "name": "energy",
+        "type": "F",
+        "info": "deposited energy in MeV"
+      },{
+        "name": "clusterid",
+        "type": "S",
+        "info": "id of cluster in which the hit was associated"
+      },{
+        "name": "tdcid",
+        "type": "S",
+        "info": "id of tdc entry corresponding to the hit"
+      }
+    ]
   },{
     "name": "ATOF::clusters",
     "group": 22500,

reconstruction/alert/src/main/java/org/jlab/rec/atof/banks/RecoBankWriter.java

@@ -18,6 +18,7 @@ public class RecoBankWriter {
 
     /**
      * Writes the bank of atof hits.
+     * Hits represent hits in the scintillators.
      *
      * @param event the {@link DataEvent} in which to add the bank
      * @param wedgeHits the {@link ArrayList} of {@link ATOFHit} containing the
@@ -55,6 +56,52 @@ public static DataBank fillATOFHitBank(DataEvent event, ArrayList<ATOFHit> wedge
         }
         return bank;
     }
+
+    /**
+     * Writes the bank of atof hits in single sipm channels.
+     *
+     * @param event the {@link DataEvent} in which to add the bank
+     * @param wedgeHits the {@link ArrayList} of {@link ATOFHit} containing the
+     * wedge hits to be added to the bank
+     * @param barHits the {@link ArrayList} of {@link BarHit} containing the bar
+     * hits that are an association of single sipm hits to be added to the bank. 
+     * @return {@link DataBank} the bank with all the hits read in the event.
+     *
+     */
+    public static DataBank fillATOFChannelHitBank(DataEvent event, ArrayList<ATOFHit> wedgeHits, ArrayList<BarHit> barHits) {
+
+        ArrayList<ATOFHit> hitList = new ArrayList<>();
+        hitList.addAll(wedgeHits);
+        for(int i_bar_hits=0; i_bar_hits<barHits.size(); i_bar_hits++){
+            BarHit thisBarHit = barHits.get(i_bar_hits);
+            hitList.add(thisBarHit.getHitUp());
+            hitList.add(thisBarHit.getHitDown());
+
+        }
+
+        DataBank bank = event.createBank("ATOF::calibhits", hitList.size());
+
+        if (bank == null) {
+            System.err.println("COULD NOT CREATE A ATOF::calibhits BANK!!!!!!");
+            return null;
+        }
+
+        for (int i = 0; i < hitList.size(); i++) {
+            bank.setShort("id", i, (short) (i + 1));
+            bank.setShort("clusterid", i, (short) hitList.get(i).getAssociatedClusterIndex());
+            bank.setShort("tdcid", i, (short) hitList.get(i).getIdTDC());
+            bank.setInt("sector", i, (int) hitList.get(i).getSector());
+            bank.setInt("layer", i, (int) hitList.get(i).getLayer());
+            bank.setInt("component", i, (int) hitList.get(i).getComponent());
+            bank.setInt("order", i, (int) hitList.get(i).getOrder());
+            bank.setFloat("time", i, (float) hitList.get(i).getTime());
+            bank.setFloat("x", i, (float) (hitList.get(i).getX()));
+            bank.setFloat("y", i, (float) (hitList.get(i).getY()));
+            bank.setFloat("z", i, (float) (hitList.get(i).getZ()));
+            bank.setFloat("energy", i, (float) hitList.get(i).getEnergy());
+        }
+        return bank;
+    }
 
     /**
      * Writes the bank of atof clusters.
@@ -158,6 +205,13 @@ public int appendATOFBanks(DataEvent event, ArrayList<ATOFHit> wedgeHits, ArrayL
         } else {
             return 1;
         }
+
+        DataBank calibHitBank = this.fillATOFChannelHitBank(event, wedgeHits, barHits);
+        if (calibHitBank != null) {
+            event.appendBank(calibHitBank);
+        } else {
+            return 1;
+        }
 
         return 0;
     }

reconstruction/alert/src/main/java/org/jlab/rec/atof/hit/ATOFHit.java

@@ -25,7 +25,7 @@ public class ATOFHit {
     private String type;
     private boolean isInACluster;
     private int associatedClusterIndex;
-    int idTDC;
+    private int idTDC;
 
     public int getSector() {
         return sector;

reconstruction/alert/src/main/java/org/jlab/rec/atof/hit/BarHit.java

@@ -30,6 +30,13 @@ public ATOFHit getHitDown() {
     public void setHitDown(ATOFHit hit_down) {
         this.hitDown = hit_down;
     }
+
+    @Override
+    public void setAssociatedClusterIndex(int index) {
+        super.setAssociatedClusterIndex(index);
+        this.hitDown.setAssociatedClusterIndex(index);
+        this.hitUp.setAssociatedClusterIndex(index);
+    }
 
     /**
      * Computes bar hit z coordinate from up/downstream hit times.

reconstruction/alert/src/main/java/org/jlab/rec/atof/hit/HitFinder.java

@@ -86,10 +86,11 @@ public void findHits(DataEvent event, Detector atof) {
 
             //Building a Hit
             ATOFHit hit = new ATOFHit(sector, layer, component, order, tdc, tot, atof);
+            hit.setIdTDC(i);
             if (hit.getEnergy() < 0.01) {
                 continue; //energy threshold
             }
-
+            
             //Sorting the hits into wedge, upstream and downstream bar hits
             //Lists are built for up/down bar to match them after
             //Wedge hits are mayched to ahdc tracks and listed 

reconstruction/alert/src/main/java/org/jlab/service/atof/ATOFEngine.java

@@ -103,7 +103,7 @@ public boolean processDataEvent(DataEvent event) {
         clusterFinder.makeClusters(event,hitfinder);
         ArrayList<ATOFCluster> Clusters = clusterFinder.getClusters();
 
-        if (WedgeHits.size() != 0 || BarHits.size() != 0) {
+        if (!WedgeHits.isEmpty() || !BarHits.isEmpty()) {
             rbc.appendATOFBanks(event, WedgeHits, BarHits, Clusters);
         }
         return true;