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Update mpi version (mpi-hpe/mpt.2.25 not working any more on Pleiades) #15

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Update mpi version (mpi-hpe/mpt.2.25 not working any more on Pleiades) #15

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2 changes: 1 addition & 1 deletion regions/CCS/v05/code/linux_amd64_ifort+mpi_ice_nas
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# or using older intel compiler:
# > module load comp-intel/2016.2.181
#- and, with MPI:
# > module load mpi-hpe/mpt.2.25
# > module load mpi-hpe
# > module load hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
#- and without:
# > module load hdf4/4.2.12 hdf5/1.8.18_serial netcdf/4.4.1.1_serial
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2 changes: 1 addition & 1 deletion regions/GoA/v05/code/linux_amd64_ifort+mpi_ice_nas
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# or using older intel compiler:
# > module load comp-intel/2016.2.181
#- and, with MPI:
# > module load mpi-hpe/mpt.2.25
# > module load mpi-hpe
# > module load hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
#- and without:
# > module load hdf4/4.2.12 hdf5/1.8.18_serial netcdf/4.4.1.1_serial
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2 changes: 1 addition & 1 deletion regions/LR17/v05/code/linux_amd64_ifort+mpi_ice_nas
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# or using older intel compiler:
# > module load comp-intel/2016.2.181
#- and, with MPI:
# > module load mpi-hpe/mpt.2.25
# > module load mpi-hpe
# > module load hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
#- and without:
# > module load hdf4/4.2.12 hdf5/1.8.18_serial netcdf/4.4.1.1_serial
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2 changes: 1 addition & 1 deletion regions/Med/v05/code/linux_amd64_ifort+mpi_ice_nas
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# or using older intel compiler:
# > module load comp-intel/2016.2.181
#- and, with MPI:
# > module load mpi-hpe/mpt.2.25
# > module load mpi-hpe
# > module load hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
#- and without:
# > module load hdf4/4.2.12 hdf5/1.8.18_serial netcdf/4.4.1.1_serial
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2 changes: 1 addition & 1 deletion regions/RedSea/v05/code/linux_amd64_ifort+mpi_ice_nas
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# or using older intel compiler:
# > module load comp-intel/2016.2.181
#- and, with MPI:
# > module load mpi-hpe/mpt.2.25
# > module load mpi-hpe
# > module load hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
#- and without:
# > module load hdf4/4.2.12 hdf5/1.8.18_serial netcdf/4.4.1.1_serial
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2 changes: 1 addition & 1 deletion v02/cs510_Brix/readme.txt
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Expand Up @@ -12,7 +12,7 @@ cd ..
mkdir build
cd build
module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
../tools/genmake2 -of \
../../ecco_darwin/v02/cs510_brix/code/linux_amd64_ifort+mpi_ice_nas \
-mo ../../ecco_darwin/v02/cs510_brix/code
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2 changes: 1 addition & 1 deletion v03/cs510_Brix/readme.txt
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Expand Up @@ -17,7 +17,7 @@ cd ..
mkdir build
cd build
module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
../tools/genmake2 -of \
../../ecco_darwin/v03/cs510_brix/code/linux_amd64_ifort+mpi_ice_nas \
-mo ../../ecco_darwin/v03/cs510_brix/code
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2 changes: 1 addition & 1 deletion v03/cs510_latest/readme.txt
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Expand Up @@ -9,7 +9,7 @@ cd ..
mkdir build
cd build
module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
-mo ../../ecco_darwin/v03/cs510_latest/code
make depend
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2 changes: 1 addition & 1 deletion v04/llc270_JAMES_budget/readme_darwin.txt
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mkdir build run
cd build
module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
../tools/genmake2 -of \
../../ecco_darwin/v04/llc270_JAMES_budget/code/linux_amd64_ifort+mpi_ice_nas -mo \
'../../ecco_darwin/v04/llc270_JAMES_budget/code_darwin ../../ecco_darwin/v04/llc270_JAMES_budget/code'
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2 changes: 1 addition & 1 deletion v04/llc270_JAMES_paper/readme/readme_85_92.txt
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mkdir build run
cd build
module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
MOD="../../ecco_darwin/v04/llc270_JAMES_paper"
../tools/genmake2 -of ${MOD}/code/linux_amd64_ifort+mpi_ice_nas \
-mo "${MOD}/code ${MOD}/code_85_92 "
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2 changes: 1 addition & 1 deletion v04/llc270_JAMES_paper/readme/readme_ecco_darwin.txt
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mkdir build run
cd build
module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
../tools/genmake2 -of \
../../ecco_darwin/v04/llc270_JAMES_paper/code/linux_amd64_ifort+mpi_ice_nas -mo \
'../../ecco_darwin/v04/llc270_JAMES_paper/code_darwin ../../ecco_darwin/v04/llc270_JAMES_paper/code'
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2 changes: 1 addition & 1 deletion v04/llc270_JAMES_paper/readme/readme_ecco_darwin_verification.txt
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mkdir build run
cd build
module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
../tools/genmake2 -ieee -of \
../../ecco_darwin/v04/llc270_JAMES_paper/code/linux_amd64_ifort+mpi_ice_nas -mo \
'../../ecco_darwin/v04/llc270_JAMES_paper/code_darwin ../../ecco_darwin/v04/llc270_JAMES_paper/code'
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2 changes: 1 addition & 1 deletion v04/llc270_JAMES_paper/readme/readme_physics.txt
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mkdir build run
cd build
module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
MOD="../../ecco_darwin/v04/llc270_JAMES_paper"
../tools/genmake2 -of ${MOD}/code/linux_amd64_ifort+mpi_ice_nas \
-mo ${MOD}/code
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2 changes: 1 addition & 1 deletion v04/llc270_devel/readme_darwin.txt
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Expand Up @@ -16,7 +16,7 @@ cd ..
mkdir build
cd build
module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
../tools/genmake2 -of \
../../ecco_darwin/v04/llc270_devel/code/linux_amd64_ifort+mpi_ice_nas -mo \
'../../ecco_darwin/v04/llc270_devel/code_darwin ../../ecco_darwin/v04/llc270_devel/code'
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2 changes: 1 addition & 1 deletion v05/1deg/input_darwin_v4r4/job_ECCOV4r4
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#PBS -e error

module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module list

umask 022
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2 changes: 1 addition & 1 deletion v05/1deg/readme_darwin_v4r4.txt
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Expand Up @@ -15,7 +15,7 @@ cd darwin3
mkdir build run
cd build
rm *
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
MOD="../../ecco_darwin/v05/1deg"
../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
-mo '../../ecco_darwin/v05/1deg/code_darwin_v4r4 ../../ecco_darwin/v05/1deg/code_v4r4' -mpi
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2 changes: 1 addition & 1 deletion v05/1deg/readme_darwin_v4r5.txt
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Expand Up @@ -25,7 +25,7 @@ cd darwin3
mkdir build run
cd build
rm *
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt python3/3.9.12
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt python3/3.9.12
MOD="../../ecco_darwin/v05/1deg"
../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
-mo '../../ecco_darwin/v05/1deg/code_darwin_v4r5 ../../ecco_darwin/v05/1deg/code_v4r5' -mpi
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2 changes: 1 addition & 1 deletion v05/1deg/readme_v4r4.txt
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Expand Up @@ -15,7 +15,7 @@ cd darwin3
mkdir build run
cd build
rm *
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
MOD="../../ecco_darwin/v05/1deg"
../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
-mo ${MOD}/code_v4r4 -mpi
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4 changes: 2 additions & 2 deletions v05/1deg/readme_v4r5.txt
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Expand Up @@ -25,7 +25,7 @@ cd MITgcm
mkdir build run
cd build
rm *
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
MOD="../../ecco_darwin/v05/1deg"
../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
-mo ${MOD}/code_v4r5 -mpi
Expand Down Expand Up @@ -61,7 +61,7 @@ cd MITgcm
mkdir build2 run2
cd build2
rm *
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
MOD="../../ecco_darwin/v05/1deg"
../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
-mo ${MOD}/code_v4r5_v2 -mpi
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2 changes: 1 addition & 1 deletion v05/1deg_CDR/readme_darwin.txt
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Expand Up @@ -15,7 +15,7 @@ cd darwin3
mkdir build_cdr run_cdr
cd build_cdr
rm *
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
MOD="../../ecco_darwin/v05/1deg"
../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
-mo '../../ecco_darwin/v05/1deg_CDR/code_darwin ../../ecco_darwin/v05/1deg/code_darwin ../../ecco_darwin/v05/1deg/code_v4r4' -mpi
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2 changes: 1 addition & 1 deletion v05/1deg_runoff/readme_darwin_v4r5.txt
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Expand Up @@ -17,7 +17,7 @@ cd darwin3
mkdir build run
cd build
rm *
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt python3/3.9.12
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt python3/3.9.12
MOD="../../ecco_darwin/v05/1deg_runoff"
../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
-mo '../../ecco_darwin/v05/1deg_runoff/code_darwin_v4r5 ../../ecco_darwin/v05/1deg_runoff/code_v4r5' -mpi
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2 changes: 1 addition & 1 deletion v05/3deg/input/job_3deg_darwin3
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#PBS -e error

module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module list

umask 022
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2 changes: 1 addition & 1 deletion v05/3deg/readme.txt
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Expand Up @@ -39,7 +39,7 @@
# Prerequisite: 1. Get code
cd ../build
rm *
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
cp ../../ecco_darwin/v05/3deg/code/SIZE.h_mpi SIZE.h
../tools/genmake2 -of ../../ecco_darwin/v05/llc270/code/linux_amd64_ifort+mpi_ice_nas \
-mo '../../ecco_darwin/v05/3deg/code ../../ecco_darwin/v05/llc270/code_darwin ../../ecco_darwin/v05/llc270/code' -mpi
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2 changes: 1 addition & 1 deletion v05/3deg/readme_sed.txt
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Expand Up @@ -40,7 +40,7 @@
# Prerequisite: 1. Get code
cd ../build
rm *
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
cp ../../ecco_darwin/v05/3deg/code/SIZE.h_mpi SIZE.h
../tools/genmake2 -of ../../ecco_darwin/v05/llc270/code/linux_amd64_ifort+mpi_ice_nas \
-mo '../../ecco_darwin/v05/3deg/code ../../ecco_darwin/v05/llc270_sediment/code_darwin ../../ecco_darwin/v05/llc270/code' -mpi
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2 changes: 1 addition & 1 deletion v05/3deg_CDR/input/job_3deg_darwin3
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#PBS -e error

module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module list

umask 022
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2 changes: 1 addition & 1 deletion v05/3deg_CDR_MacroA/input/job_3deg_darwin3
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#PBS -e error

module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module list

umask 022
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2 changes: 1 addition & 1 deletion v05/llc270/code/linux_amd64_ifort+mpi_ice_nas
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# or using older intel compiler:
# > module load comp-intel/2016.2.181
#- and, with MPI:
# > module load mpi-hpe/mpt.2.25
# > module load mpi-hpe
# > module load hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
#- and without:
# > module load hdf4/4.2.12 hdf5/1.8.18_serial netcdf/4.4.1.1_serial
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2 changes: 1 addition & 1 deletion v05/llc270/code/linux_amd64_ifort+mpi_ice_nas_rome
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# or using older intel compiler:
# > module load comp-intel/2016.2.181
#- and, with MPI:
# > module load mpi-hpe/mpt.2.25
# > module load mpi-hpe
# > module load hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
#- and without:
# > module load hdf4/4.2.12 hdf5/1.8.18_serial netcdf/4.4.1.1_serial
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2 changes: 1 addition & 1 deletion v05/llc270_N2O/code/linux_amd64_ifort+mpi_ice_nas
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# or using older intel compiler:
# > module load comp-intel/2016.2.181
#- and, with MPI:
# > module load mpi-hpe/mpt.2.25
# > module load mpi-hpe
# > module load hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
#- and without:
# > module load hdf4/4.2.12 hdf5/1.8.18_serial netcdf/4.4.1.1_serial
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2 changes: 1 addition & 1 deletion v05/llc270_N2O/code/linux_amd64_ifort+mpi_ice_nas_rome
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Expand Up @@ -6,7 +6,7 @@
# or using older intel compiler:
# > module load comp-intel/2016.2.181
#- and, with MPI:
# > module load mpi-hpe/mpt.2.25
# > module load mpi-hpe
# > module load hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
#- and without:
# > module load hdf4/4.2.12 hdf5/1.8.18_serial netcdf/4.4.1.1_serial
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2 changes: 1 addition & 1 deletion v05/llc270_sediment/code/linux_amd64_ifort+mpi_ice_nas
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# or using older intel compiler:
# > module load comp-intel/2016.2.181
#- and, with MPI:
# > module load mpi-hpe/mpt.2.25
# > module load mpi-hpe
# > module load hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
#- and without:
# > module load hdf4/4.2.12 hdf5/1.8.18_serial netcdf/4.4.1.1_serial
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2 changes: 1 addition & 1 deletion v05/llc270_sediment/code/linux_amd64_ifort+mpi_ice_nas_rome
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# or using older intel compiler:
# > module load comp-intel/2016.2.181
#- and, with MPI:
# > module load mpi-hpe/mpt.2.25
# > module load mpi-hpe
# > module load hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
#- and without:
# > module load hdf4/4.2.12 hdf5/1.8.18_serial netcdf/4.4.1.1_serial
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2 changes: 1 addition & 1 deletion v05/llc270_sediment/input/job_ECCO_darwin
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#PBS -e error

module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module list

umask 022
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2 changes: 1 addition & 1 deletion v06/1deg/readme_darwin_v4r5.txt
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Expand Up @@ -17,7 +17,7 @@ cd darwin3
mkdir build run
cd build
rm *
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt python3/3.9.12
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt python3/3.9.12
MOD="../../ecco_darwin/v06/1deg"
../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
-mo '../../ecco_darwin/v06/1deg/code_darwin_v4r5 ../../ecco_darwin/v06/1deg/code_v4r5' -mpi
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2 changes: 1 addition & 1 deletion v06/llc270/input/job_ECCO_darwin
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#PBS -e error

module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
module list

umask 022
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2 changes: 1 addition & 1 deletion v06/llc270/readme.txt
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Expand Up @@ -13,7 +13,7 @@ cd build
# 2. Build executable for v06 ECCO-Darwin

module purge
module load comp-intel/2020.4.304 mpi-hpe/mpt.2.25 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt python3/3.9.12
module load comp-intel/2020.4.304 mpi-hpe hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt python3/3.9.12
../tools/genmake2 -of ../../ecco_darwin/v06/llc270/code/linux_amd64_ifort+mpi_ice_nas \
-mo '../../ecco_darwin/v06/llc270/code_darwin ../../ecco_darwin/v06/llc270/code'
make depend
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