Add experimental proemis3d code to the main branch

.github/workflows/ci.yml

@@ -10,23 +10,24 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
       - name: Setup Python
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v5
         with:
           python-version: 3.11.4
       - name: Use pip cache
-        uses: actions/cache@v2
+        uses: actions/cache@v4
         with:
           path: ~/.cache/pip
           key: pip-${{ hashFiles('**/requirements*.txt') }}
           restore-keys: |
             pip-
       - name: Install Python dependencies
         run: |
+          python -m pip install --upgrade pip
           pip install wheel
-          pip install -r requirements-dev.txt
           pip install hail
+          pip install -r requirements-dev.txt
       - name: Setup R
         uses: r-lib/actions/setup-r@v2
         with:

.pylintrc

@@ -5,9 +5,10 @@ notes=FIXME,
       XXX,
 
 [MESSAGES CONTROL]
-init-hook="from pylint.config import find_pylintrc; import os, sys; sys.path.append(os.path.dirname(find_pylintrc()))"
 
 disable=
+  # Disable because ~ is used in a lot of hail code where it is not an error
+  invalid-unary-operand-type,
   unused-wildcard-import,
   R,
   C,

gnomad_constraint/experimental/__init__.py

@@ -0,0 +1 @@
+# noqa: D104