Christopher Dampier
This is a repo to store and version my scripts for clinical informatics applications. Right now, I have only R and Python scripts, and I am not sure how to integrate them into Epic or other EHRs. In the future, I will learn how to integrate them, and I will develop more.
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MUMPS (Massachusetts General Hospital Utility Multi-Programming System)
- Kevin Okane's MUMPS page at the University of Northern Iowa
- Ray Newman's ANSI Standard MUMPS on sourceforge.net
- MUMPS homepage on sourceforge.net
- Luis Ibanez's blog on Opensource.com
- Intersystems's courses page
- Ed de Moel's annotations page
- VistA community page
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UVa
- CADRE homepage
- SOMRC homepage
- ARCS homepage
- Health system data scientists
- Jonathan Michel
- Valentina Baljak
- Richard Salaway
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Epic
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ORIEN (Oncology Research Information Exchange Network)
- Homepage
- Avatar data portal (evidently the QlikView tool is useful)
- UVa contacts
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AMIA (American Medical Informatics Association)
- Homepage
- Translational Bioinformatics page
- Genomics working group
- NGS in EHR presentation, 2014
- Clinical genomics at UVa: TruSight (in-house); why are Ambry, Invitae not sending XML/JSON
- c.p. nomenclature reference
- Invitae, Ambry (cancer, germline), GeneDx (peds)
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HIMSS (Healthcare Information and Management Systems Society)
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HL7 (Health Level Seven International)
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OSEHRA (Open Source Electronic Health Record Alliance)
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HSPC (Healthcare Services Platform Consortium)
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Tatonetti Lab
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spacy
- Hompage
- Python module for natural language processing
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PheKB
- Homepage
- PubMed abstract
- rule sets for rule-based phenotype extraction
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OHDSI (Observational Health Data Sciences and Informatics)
- Homepage
- OMOP common data model