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Provide more informative error message when encountering unexpected n… #689

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Provide more informative error message when encountering unexpected n… #689

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3 changes: 2 additions & 1 deletion sam.c
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Original file line number Diff line number Diff line change
Expand Up @@ -941,7 +941,8 @@ static bam_hdr_t *sam_hdr_sanitise(bam_hdr_t *h) {
if (last == '\n') {
lnum++;
if (cp[i] != '@') {
hts_log_error("Malformed SAM header at line %u", lnum);
uint32_t offset = i < 300 ? 0 : (i - 300);
hts_log_error("Malformed SAM header: unexpected newline character at line %u in ... %s", lnum , cp + offset);
bam_hdr_destroy(h);
return NULL;
}
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