Skip to content
View AmirUCR's full-sized avatar
🎸
🎸
5 followers · 1 following

Highlights

  • Pro

Block or report AmirUCR

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
AmirUCR/README.md

Hi there! 👋

I'm Amir, a Ph.D. candidate in Computer Science at UC Riverside, based in sunny Southern California 🌴

My research focuses on computational biology, with interests in genome editing (CRISPR), algorithm design, and large-scale data analysis. I build open-source tools that help make biological data more accessible, efficient, and scalable.

🧬 Most recent projects include:

  • SIRIUS – (current, coming soon) efficient and optimal divergent synonymous gene design
  • ALLEGRO – ultra-compact CRISPR guide library design across species
  • FUGUE – unified genome downloader for 2,000+ fungal species
  • MSTMap Online – performant web-server for linkage mapping, and its companion Python library

Outside the terminal, you’ll find me climbing, hiking, practicing Deutsch, or playing guitar 🎸

🔬 Let’s build tools that matter.

Pinned Loading

  1. ucrbioinfo/ALLEGRO ucrbioinfo/ALLEGRO Public

    Forked from AmirUCR/ALLEGRO

    ALLEGRO is a synthetic biology tool that designs minimal, high activity Cas9 sgRNA libraries

    C++ 2

  2. SIRIUS SIRIUS Public

    SIRIUS is a synthetic biology tool that, given a peptide sequence, designs n maximally divergent gene sequences

    C++ 1

  3. FUGUE FUGUE Public

    FUGUE is a Python data collector and preprocessing tool for ALLEGRO

    Jupyter Notebook 1

  4. MSTmap-Python MSTmap-Python Public

    A Python wrapper and standalone library for MSTmap and its web-server https://mstmap.org

    C++ 1

  5. ucrbioinfo/deepguide_reborn ucrbioinfo/deepguide_reborn Public

    A reimplementation of the original https://github.com/dDipankar/DeepGuide by Dipankar Ranjan Baisya

    Python 1

  6. Java-DB-Mechanic-Shop Java-DB-Mechanic-Shop Public

    A JavaFX application that connects to a local PostgreSQL database

    HTML 2 1