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2ca5ed9
linting towards clean BiocCheck
CATALYST-project Aug 6, 2023
cfd3c5b
linting round #1
CATALYST-project Aug 14, 2023
aa187dd
update GHA to use R/Bioc devel
CATALYST-project Aug 14, 2023
2533180
update GHA to use Bioc devel
CATALYST-project Aug 14, 2023
7c3a2f8
resolve conflics
CATALYST-project Aug 18, 2023
fd3bc17
move required png to inst/extdata & rmv others
CATALYST-project Aug 18, 2023
c09f007
doc cleaning
CATALYST-project Aug 21, 2023
0464ebc
Merge pull request #3 from HelenaLC/linting
HelenaLC Aug 21, 2023
797cf25
Merge pull request #83 from HelenaLC/master
stemangiola Aug 21, 2023
b60f538
first iteration
stemangiola Aug 24, 2023
d302642
optimise the subset operation
stemangiola Aug 24, 2023
4195aa8
split only matrix
stemangiola Aug 24, 2023
5fb88fa
improve subset
stemangiola Aug 24, 2023
17ed087
dependency fix
stemangiola Aug 24, 2023
7591180
add argument to aggregate_cells
stemangiola Aug 24, 2023
5bc1f75
add ellipsis
stemangiola Aug 24, 2023
5d9a9da
Merge branch 'speedup-aggregate_cells' of github.com:stemangiola/tidy…
stemangiola Aug 24, 2023
deb5f4d
replace for ellipsis
stemangiola Aug 25, 2023
55872c0
update dependency
stemangiola Aug 25, 2023
325b0a9
Merge pull request #87 from stemangiola/harmonised-with-ttservice-0.3.7
stemangiola Aug 25, 2023
08a216f
first iteration
stemangiola Aug 24, 2023
b166f96
optimise the subset operation
stemangiola Aug 24, 2023
0d774cf
split only matrix
stemangiola Aug 24, 2023
557232c
improve subset
stemangiola Aug 24, 2023
4387eca
add ellipsis
stemangiola Aug 24, 2023
7d6d1bf
dependency fix
stemangiola Aug 24, 2023
8479968
Merge branch 'speedup-aggregate_cells' of https://github.com/stemangi…
stemangiola Aug 25, 2023
dfc16a9
fix dependencies
stemangiola Aug 25, 2023
f38d190
Merge pull request #86 from stemangiola/speedup-aggregate_cells
stemangiola Aug 25, 2023
77c9937
Update DESCRIPTION
stemangiola Aug 25, 2023
e6fc0ab
slice_sample()
noriakis Aug 26, 2023
6b65c0c
add slice_head()
noriakis Aug 26, 2023
92ec117
add slice_tail()
noriakis Aug 26, 2023
c2e4e42
slice_min() and slice_max()
noriakis Aug 27, 2023
6083493
update documentation
noriakis Aug 29, 2023
17eaee1
update slice_sample
noriakis Aug 30, 2023
c6d661e
Update dplyr_methods.R
noriakis Aug 30, 2023
f54c934
Update test-dplyr_methods.R
noriakis Aug 30, 2023
20fcdda
Update dplyr_methods.R
noriakis Aug 30, 2023
06c6132
Merge pull request #90 from noriakis/add-slice
stemangiola Aug 30, 2023
5aba1ec
Add tibble visualisation note to documentation
william-hutchison Sep 7, 2023
61eaf0f
Add informative join_features message
william-hutchison Sep 8, 2023
a3dc67e
Merge pull request #94 from william-hutchison/master
stemangiola Sep 8, 2023
6107cf5
update man
stemangiola Sep 18, 2023
cdad9bf
update README and vignette
stemangiola Sep 18, 2023
92ebb1d
Allow y as S4 DataFrame in *_join()
lambdamoses Oct 18, 2023
bcd3f55
Refactored using function factory
lambdamoses Oct 18, 2023
6d7414d
Merge pull request #98 from lambdamoses/master
stemangiola Oct 19, 2023
88b5d74
Merge branch 'stemangiola:master' into factory
lambdamoses Oct 21, 2023
326384e
Merge pull request #99 from lambdamoses/factory
stemangiola Oct 22, 2023
9bea2c1
bump x.y.z version to even y prior to creation of RELEASE_3_18 branch
jwokaty Oct 24, 2023
542caac
bump x.y.z version to odd y following creation of RELEASE_3_18 branch
jwokaty Oct 24, 2023
201d049
Remove duplicate plot_ly definitions
william-hutchison Nov 1, 2023
08b240a
Add plot_ly example
william-hutchison Nov 1, 2023
66de8b0
Version up
william-hutchison Nov 1, 2023
1794377
Merge pull request #100 from william-hutchison/master
stemangiola Nov 2, 2023
ad1a109
solve conflict pull upstream
stemangiola Nov 2, 2023
d22e6ec
Update DESCRIPTION
stemangiola Nov 3, 2023
b093d2a
fix-biocCHECK
stemangiola Nov 17, 2023
bac7de8
update workflows
stemangiola Dec 4, 2023
beef720
fix checks
stemangiola Dec 4, 2023
c874828
drop arrange test because package Matrix fails
stemangiola Dec 4, 2023
c5ff88a
fix tests
stemangiola Dec 5, 2023
06166ac
fix tests
stemangiola Dec 5, 2023
b3a5e01
drop warning tests for github action, locally they work.
stemangiola Dec 5, 2023
d05e892
fix tests
stemangiola Dec 5, 2023
8bf5436
Merge pull request #102 from stemangiola/stemangiola-patch-1
stemangiola Dec 5, 2023
c68e190
Merge branch 'master' into rebase-solve-conflicts
stemangiola Dec 6, 2023
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338 changes: 0 additions & 338 deletions .github/workflows/check-bioc.yml

This file was deleted.

57 changes: 57 additions & 0 deletions .github/workflows/rworkflows.yml
Original file line number Diff line number Diff line change
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name: rworkflows
'on':
push:
branches:
- master
- main
- devel
- RELEASE_**
pull_request:
branches:
- master
- main
- devel
- RELEASE_**
jobs:
rworkflows:
permissions: write-all
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
container: ${{ matrix.config.cont }}
strategy:
fail-fast: ${{ false }}
matrix:
config:
- os: ubuntu-latest
bioc: devel
r: auto
cont: ghcr.io/bioconductor/bioconductor_docker:devel
rspm: ~
- os: macOS-latest
bioc: release
r: auto
cont: ~
rspm: ~
- os: windows-latest
bioc: release
r: auto
cont: ~
rspm: ~
steps:
- uses: neurogenomics/rworkflows@master
with:
run_bioccheck: ${{ false }}
run_rcmdcheck: ${{ true }}
as_cran: ${{ true }}
run_vignettes: ${{ true }}
has_testthat: ${{ true }}
run_covr: ${{ true }}
run_pkgdown: ${{ true }}
has_runit: ${{ false }}
has_latex: ${{ false }}
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run_docker: ${{ false }}
DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }}
runner_os: ${{ runner.os }}
cache_version: cache-v1
docker_registry: ghcr.io
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