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Lieber Institute for Brain Development

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  1. spatialLIBD spatialLIBD Public

    Code for the spatialLIBD R/Bioconductor package and shiny app

    R 96 23

  2. HumanPilot HumanPilot Public

    Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

    HTML 83 31

  3. recount3 recount3 Public

    Explore and download data from the recount3 project

    R 36 4

  4. 10xPilot_snRNAseq-human 10xPilot_snRNAseq-human Public

    10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC

    HTML 23 9

  5. spatialDLPFC spatialDLPFC Public

    spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

    HTML 22 4

  6. dotdotdot dotdotdot Public

    Example vignette for dotdotdot software

    MATLAB 18 11

Repositories

Showing 10 of 123 repositories
  • Posit_Connect_shiny_apps Public

    Code for Posit Connect R shiny apps (spatialLIBD, iSEE, ...)

    LieberInstitute/Posit_Connect_shiny_apps’s past year of commit activity
    R 0 0 0 0 Updated Sep 5, 2025
  • spatialDLPFC Public

    spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

    LieberInstitute/spatialDLPFC’s past year of commit activity
    HTML 22 4 0 0 Updated Aug 29, 2025
  • template_project Public template

    Template project following the guidelines from https://lcolladotor.github.io/bioc_team_ds/organizing-your-work.html#.YzL43uzMKX0

    LieberInstitute/template_project’s past year of commit activity
    R 4 0 0 0 Updated Aug 29, 2025
  • slurmjobs Public

    Helper functions for working with SLURM from R

    LieberInstitute/slurmjobs’s past year of commit activity
    R 2 1 2 0 Updated Aug 29, 2025
  • jhpce_module_config Public

    JHPCE module configuration files

    LieberInstitute/jhpce_module_config’s past year of commit activity
    Lua 4 0 0 0 Updated Aug 12, 2025
  • jhpce_module_source Public

    JHPCE module source files

    LieberInstitute/jhpce_module_source’s past year of commit activity
    Shell 0 0 0 0 Updated Aug 12, 2025
  • globus Public

    LIBD Globus Share Endpoints

    LieberInstitute/globus’s past year of commit activity
    HTML 0 1 0 0 Updated Aug 7, 2025
  • spatialdACC Public

    spatialdACC project

    LieberInstitute/spatialdACC’s past year of commit activity
    HTML 0 0 0 0 Updated Jul 31, 2025
  • DeconvoBuddies Public

    Helper Functions for LIBD Deconvolution

    LieberInstitute/DeconvoBuddies’s past year of commit activity
    R 5 Artistic-2.0 2 7 0 Updated Jul 28, 2025
  • spatial_hpc Public

    Repository for the spatial (U01) hippocampus (hipc) project

    LieberInstitute/spatial_hpc’s past year of commit activity
    HTML 6 2 1 0 Updated Jul 25, 2025

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