Allow creation of domains without networking for bootstrapping

[tegefaulkes]

Specification

For bootstrapping we want to set up Polykey state without starting up networking or attempting network discovery. To do this we just need to create and start domains that use and modify the DB as well as others. Some of these depend on networking code so to streamline this we need the ability to create some domains without providing networking as a dependency.

Alternatively, we can extract all of the state creation to utility functions and call only those in bootstrapping.

Additional context

• Related: js-quic integration and Agent migration #525 (comment)

Tasks

1. streamline the bootstrapping process.
2. Avoid depending on networking domains when doing bootstrapping.
3. Avoid any typescript hacks such as as any or as domain.

[tegefaulkes]

The creation of the NodeConnectionManger in bootstrapping has been removed. Any dependency of NodeConnectionManager has been replaced with {} as any.

[CMCDragonkai]

This requires some thinking, especially in relation to an IoC container, as well as dealing with destroy after stop.

I think the issue right now is that certain dependencies are being needed for certain side effects. If those side effects could be done without needing those dependencies, it would probably work better.

Should be thought about in relation to #442.