Modify annotate_mutation_type to take optional context length as a parameter.
#530
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The way context_length is currently determined, there needs to be a full scan through the HT/MT. This allows for a parameter to be passed in instead.
It also throws an error if it finds a 'context' value that is not the expected length. And if no parameter is passed it will detect it using the number of specified values in
num_scan_context_length.