Add sample_list_stratification
option to create_fake_pedigree
function
#564
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
sample_list_stratification
is an optional dictionary with samples as keys and a value that should be used to stratify samples insample_list
into groups that the trio should be picked from. This ensures that each fake trio will contain samples from only the same stratification. For example, if all samples within a fake trio should be chosen from the same platform, this can be a dictionary of sample: platform.