-
-
Notifications
You must be signed in to change notification settings - Fork 237
Closed
Description
From: nfdi4plants/nf-core-pipeline-to-arc#9
Expected Behavior
type: float of 0.00001 or smaller are still represented as normal numbers (0.00001) on the command line
Actual Behavior
It is serialized using scientific notation 1e-05
Workflow Code
cwlVersion: v1.0
class: CommandLineTool
baseCommand: echo
inputs:
annotation_prokka_evalue:
type: float?
default: 0.00001
inputBinding: {}
outputs: []Full Traceback
INFO /home/michael/cwltool/env3.11/bin/cwltool 3.1
INFO Resolved 'too-small-test.cwl' to 'file:///home/michael/cwltool/too-small-test.cwl'
DEBUG Parsed job order from command line: {
"id": "too-small-test.cwl",
"annotation_prokka_evalue": 1e-05
}
DEBUG [job too-small-test.cwl] initializing from file:///home/michael/cwltool/too-small-test.cwl
DEBUG [job too-small-test.cwl] {
"annotation_prokka_evalue": 1e-05
}
DEBUG [job too-small-test.cwl] path mappings is {}
DEBUG [job too-small-test.cwl] command line bindings is [
{
"position": [
-1000000,
0
],
"datum": "echo"
},
{
"position": [
0,
"annotation_prokka_evalue"
],
"datum": 1e-05
}
]
DEBUG [job too-small-test.cwl] initial work dir {}
INFO [job too-small-test.cwl] /tmp/uq2p3kdl$ echo \
1e-05
1e-05
DEBUG Could not collect memory usage, job ended before monitoring began.
INFO [job too-small-test.cwl] completed success
DEBUG [job too-small-test.cwl] outputs {}
DEBUG [job too-small-test.cwl] Removing input staging directory /tmp/e11ug6hl
DEBUG [job too-small-test.cwl] Removing temporary directory /tmp/yk8r4ib_
DEBUG Removing intermediate output directory /tmp/uq2p3kdl
{}INFO Final process status is success
kinow
Metadata
Metadata
Assignees
Labels
No labels