Options for running with apptainer #33
Open
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
The aim of this pull request is to enable pytest-isolate-mpi to work with apptainer on an HPC system. For this two command line options were added:
--python_executable
, which allows to set the path to a custom python with which to run the spawned subsessions, the intention being that this will be the python inside the container.--custom_ini_for_subsession
that allows the subsession to use a different ini than the outer pytest call. Some of the mpi args can cause problems when used inside an apptainer container, so this is a very flexible way to remove those.