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@epi2me-labs

EPI2ME

Bioinformatics resources from Oxford Nanopore Technologies Plc

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  1. kraken2-server kraken2-server Public

    Kraken2 Server

    C++ 22 3

  2. wf-transcriptomes wf-transcriptomes Public

    Nextflow 102 42

  3. wf-single-cell wf-single-cell Public

    Python 95 46

  4. wf-bacterial-genomes wf-bacterial-genomes Public

    Small variant calling for haploid samples

    Python 41 20

  5. wf-human-variation wf-human-variation Public

    Nextflow 132 65

  6. fastcat fastcat Public

    Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.

    C 41 4

Repositories

Showing 10 of 30 repositories
  • wf-teloseq Public
    epi2me-labs/wf-teloseq’s past year of commit activity
    Python 2 0 2 0 Updated Aug 20, 2025
  • wf-metagenomics Public

    Metagenomic classification of long-read sequencing data

    epi2me-labs/wf-metagenomics’s past year of commit activity
    Python 93 29 8 0 Updated Aug 19, 2025
  • epi2me-labs/wf-human-variation’s past year of commit activity
    Nextflow 132 64 30 0 Updated Aug 14, 2025
  • epi2me-labs/wf-single-cell’s past year of commit activity
    Python 95 46 15 0 Updated Aug 14, 2025
  • wf-template Public

    Nextflow workflow template repository

    epi2me-labs/wf-template’s past year of commit activity
    Python 17 35 0 0 Updated Aug 14, 2025
  • wf-bacterial-genomes Public

    Small variant calling for haploid samples

    epi2me-labs/wf-bacterial-genomes’s past year of commit activity
    Python 41 20 8 0 Updated Aug 8, 2025
  • wf-aav-qc Public
    epi2me-labs/wf-aav-qc’s past year of commit activity
    Python 8 10 11 0 Updated Aug 8, 2025
  • epi2me-labs/wf-somatic-variation’s past year of commit activity
    Nextflow 18 12 17 0 Updated Aug 7, 2025
  • wf-trio Public
    epi2me-labs/wf-trio’s past year of commit activity
    Nextflow 2 1 5 0 Updated Aug 6, 2025
  • epi2me-labs/wf-transcriptomes’s past year of commit activity
    Nextflow 102 42 13 1 Updated Aug 2, 2025

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