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1. cellar cellar Public

   Interactive software tool for the assignment of cell types in single-cell studies.

   Python 34 5

2. Marlene Marlene Public

   Marlene, a method to recover temporal gene regulatory networks.

   Python 2

3. SenSet SenSet Public

   Code to generate SenSet, a novel human lung senescence cell gene signature.

   Jupyter Notebook 2

4. Truffle Truffle Public

   Trajectory Inference of clinical data via Multi-commodity Flow

   Jupyter Notebook 4 1

5. multiset-multicover multiset-multicover Public

   Multiset multicover using the extended greedy cover algorithm implemented in C++ and exposed to Python.

   C++ 6

6. grinch grinch Public

   A library for differential expression and gene set enrichment analysis based on hydra and pydantic.

   Python 3