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  1. hicognition hicognition Public

    A visual exploration and hypothesis testing tool for 3D genomics

    Python 13 2

  2. scshic_analysis scshic_analysis Public

    Contains notebooks that analyse scsHi-C data and create the scsHi-C paper figures.

    Jupyter Notebook 10

  3. scshic_pipeline scshic_pipeline Public

    scsHi-C preprocessing Nextflow pipeline

    Groovy 5

  4. scshic_docker scshic_docker Public

    Container with tools to analyse scsHi-C data.

    Dockerfile 1

  5. ngs ngs Public

    A collections of functions to facilitate analysis of HiC data based on the cooler and cooltools interfaces.

    Python 6

  6. gertils gertils Public

    general GERlich group uTILitieS

    Python 1 1

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