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@gyorilab

Gyori Lab for Computational Biomedicine

Accelerating discovery in biomedicine using AI @ Northeastern University

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  1. emmaa emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    Python 11 11

  2. indra_db indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the dat…

    Python 17 11

  3. gilda gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    Python 45 14

  4. indra_world indra_world Public

    INDRA World Modelers services

    Jupyter Notebook 9 5

  5. indra_cogex indra_cogex Public

    INDRA Context Graph Extension

    Jupyter Notebook 11 13

  6. indra indra Public

    INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly…

    Python 197 70

Repositories

Showing 10 of 58 repositories
  • indra Public

    INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

    gyorilab/indra’s past year of commit activity
    Python 197 BSD-2-Clause 70 33 7 Updated Aug 7, 2025
  • indra_variants Public

    Causal networks for variant effect mechanisms and prediction

    gyorilab/indra_variants’s past year of commit activity
    Python 0 BSD-2-Clause 2 1 0 Updated Aug 5, 2025
  • trialsynth Public

    TrialSynth interprets and integrates clinical trials data from multiple registries in a computable form

    gyorilab/trialsynth’s past year of commit activity
    Python 0 BSD-2-Clause 2 0 0 Updated Jul 31, 2025
  • indra_signor Public

    Connecting INDRA to the SIGNOR database curation workflow

    gyorilab/indra_signor’s past year of commit activity
    Python 0 0 0 0 Updated Jul 29, 2025
  • gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    gyorilab/gilda’s past year of commit activity
    Python 45 BSD-2-Clause 14 8 8 Updated Jul 23, 2025
  • outbreak_kg Public

    Knowledge graphs for disease outbreak scenarios

    gyorilab/outbreak_kg’s past year of commit activity
    Python 1 BSD-2-Clause 3 0 0 Updated Jul 21, 2025
  • ner_annotator Public
    gyorilab/ner_annotator’s past year of commit activity
    HTML 0 BSD-2-Clause 0 0 0 Updated Jul 18, 2025
  • indra_cogex Public

    INDRA Context Graph Extension

    gyorilab/indra_cogex’s past year of commit activity
    Jupyter Notebook 11 BSD-2-Clause 13 20 6 Updated Jul 15, 2025
  • gyorilab.github.io Public

    Gyori Lab website

    gyorilab/gyorilab.github.io’s past year of commit activity
    HTML 4 3 0 0 Updated Jul 15, 2025
  • indra_perturbseq Public

    Using INDRA to explain Perturb-seq data

    gyorilab/indra_perturbseq’s past year of commit activity
    0 BSD-2-Clause 1 0 0 Updated Jul 11, 2025
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