Release 1.4.2.post1

[schuenke]

What's Changed

• Fix incorrect and non-zero delay. by @btasdelen in Fix incorrect and non-zero delay. #187
• RF: Move sigpy to an extra optional dependency by @wtclarke in RF: Move sigpy to an extra optional dependency #188
• Add area attribute for arbitrary gradients by @schuenke in Add area attribute for arbitrary gradients #189
• Adjust eps value (floating point precision) by @schuenke in Adjust eps value (floating point precision) #193
• Replace setup.py by pyproject.toml by @btasdelen in Replace setup.py by pyproject.toml #195
• Add 'first' and 'last' arg to make_arbitrary_grad by @schuenke in Add 'first' and 'last' arg to make_arbitrary_grad #198
• Add calc_adc_segments for segmentation of long ADC. by @felixlandmeyer in Add calc_adc_segments for segmentation of long ADC.  #196
• Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows by @dependabot in Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows #201
• Fix direct install from GitHub repo by @schuenke in Fix direct install from GitHub repo #202
• Reworked check_timing to provide a structured error report by @FrankZijlstra in Reworked check_timing to provide a structured error report #200
• Fix inconsistency in "return_delay" argument of RF pulses by @mavel101 in Fix inconsistency in "return_delay" argument of RF pulses #206
• Add pre-commit workflow including ruff by @schuenke in Add pre-commit workflow including ruff #207
• Sequence.install functionality by @FrankZijlstra in Sequence.install functionality #190
• Assert that make_trapezoid() slew rate is smaller than max_slew by @h3lg3 in Assert that make_trapezoid() slew rate is smaller than max_slew #214
• Fix slew rate ext trapezoid by @h3lg3 in Fix slew rate ext trapezoid #217
• Add compatibility for post-release versions by @schuenke in Add compatibility for post-release versions #219
• Change package structure to src-layout by @schuenke in Change package structure to src-layout #218
• [pre-commit] pre-commit autoupdate by @pre-commit-ci in [pre-commit] pre-commit autoupdate #229
• Fix None check in make_arbitrary_grad by @schuenke in Fix None check in make_arbitrary_grad #230
• Merge dev into master by @schuenke in Merge dev into master #231
• Bug fixes and input checks for make_trapezoid by @btasdelen in Bug fixes and input checks for make_trapezoid #212
• Fix SAR calculation by @schuenke in Fix SAR calculation #232
• Add sequence / integration tests by @schuenke in Add sequence / integration tests #220
• Merge make_trapezoid changes to master. by @btasdelen in Merge make_trapezoid changes to master. #233
• Add warning to make_block_pulse() if rf.delay is changed to rf.dead_time by @h3lg3 in Add warning to make_block_pulse() if rf.delay is changed to rf.dead_time #236
• Fix tests, update workflows, support Python 3.12 tests by @schuenke in Fix tests, update workflows, support Python 3.12 tests #237
• [pre-commit] pre-commit autoupdate by @pre-commit-ci in [pre-commit] pre-commit autoupdate #245
• Fix test workflow and enable workflow runs in PRs from forks by @schuenke in Fix test workflow and enable workflow runs in PRs from forks #246
• Include examples into ruff checks and format files by @schuenke in Include examples into ruff checks and format files #238
• Fix grad.last calculation in read_seq function for arbitrary gradients by @schuenke in Fix grad.last calculation in read_seq function for arbitrary gradients #240
• Fix sigpy tests by @btasdelen in Fix sigpy tests #227
• [pre-commit] pre-commit autoupdate by @pre-commit-ci in [pre-commit] pre-commit autoupdate #259
• Timing check of ADC delay by @mavel101 in Timing check of ADC delay #235

New Contributors

• @felixlandmeyer made their first contribution in Add calc_adc_segments for segmentation of long ADC.  #196
• @dependabot made their first contribution in Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows #201
• @h3lg3 made their first contribution in Assert that make_trapezoid() slew rate is smaller than max_slew #214
• @pre-commit-ci made their first contribution in [pre-commit] pre-commit autoupdate #229

Full Changelog: v1.4.2...v1.4.2.post1

[github-actions]

Coverage Report

File	Stmts	Miss	Cover	Missing
/home/runner/.local/lib/python3.12/site-packages/pypulseq
add_gradients.py	123	51	59%	44, 52, 58, 61, 75–86, 92, 120–123, 130–131, 150, 157, 162–241
add_ramps.py	36	36	0%	1–89
align.py	35	4	89%	41, 45, 69, 73
calc_duration.py	25	1	96%	37
calc_ramp.py	218	214	2%	45–353
calc_rf_bandwidth.py	27	20	26%	37–59, 63–67
check_timing.py	87	27	69%	72, 76, 101, 194, 201, 211–255
compress_shape.py	30	1	97%	28
convert.py	40	8	80%	42, 48, 66, 72–73, 82, 88–89
event_lib.py	96	14	85%	6–9, 48–51, 70–71, 205–210
make_adc.py	92	13	86%	63, 72–76, 79, 128, 131, 135, 141, 145, 184, 186, 188, 196
make_adiabatic_pulse.py	129	39	70%	196–200, 217–221, 229–230, 253, 259, 328–347, 451–460, 498–506
make_arbitrary_grad.py	36	30	17%	66–104
make_arbitrary_rf.py	66	55	17%	83–160
make_block_pulse.py	46	3	93%	112–116, 119
make_delay.py	9	1	89%	27
make_digital_output_pulse.py	16	2	88%	39, 47
make_extended_trapezoid.py	56	14	75%	67, 70, 76, 82, 85, 88, 91, 94, 104–105, 116, 134, 136, 139
make_extended_trapezoid_area.py	92	3	97%	48, 221, 224
make_gauss_pulse.py	69	20	71%	127–131, 134–158, 165, 168
make_label.py	19	3	84%	36, 41, 43
make_sigpy_pulse.py	120	31	74%	12–13, 112, 115, 119, 154, 157–161, 165, 168–169, 172–173, 188, 200, 205, 217, 220, 245–255, 269, 272, 302–312
make_sinc_pulse.py	68	10	85%	94, 100, 127–131, 135, 138–139, 142–143, 165
make_trapezoid.py	111	7	94%	177, 190, 196, 214, 232, 237, 255
make_trigger.py	16	2	88%	44, 52
opts.py	66	9	86%	78, 83, 102, 142, 166–170
points_to_waveform.py	9	7	22%	23–38
rotate.py	69	14	80%	15, 55, 66–69, 85–90, 112, 119–120
scale_grad.py	14	4	71%	28–30, 33
sigpy_pulse_opts.py	26	7	73%	34–41
split_gradient.py	39	31	21%	46–103
split_gradient_at.py	70	27	61%	63–90, 110, 114, 118–120, 154–156
traj_to_grad.py	13	9	31%	26–40
/home/runner/.local/lib/python3.12/site-packages/pypulseq/SAR
SAR_calc.py	113	98	13%	33–40, 55–62, 89–108, 129–132, 168–212, 242–246, 264–306
/home/runner/.local/lib/python3.12/site-packages/pypulseq/Sequence
block.py	368	32	91%	59, 62, 70, 76, 91, 99, 105, 116, 119, 122, 130, 135, 144, 196, 245, 249, 265, 305–308, 337–338, 404, 410, 430, 499, 535, 541, 568, 606, 640
calc_grad_spectrum.py	81	76	6%	68–190
calc_pns.py	40	31	22%	45–96
ext_test_report.py	140	11	92%	23, 58, 61, 135, 227–233
install.py	75	42	44%	31, 52, 69, 71, 112–131, 148, 181–184, 200–212, 254–278
parula.py	4	2	50%	19–86
read_seq.py	312	68	78%	42–43, 90, 93, 105, 110, 116, 123, 132, 141, 146, 149, 157–159, 192, 197, 205–254, 284–287, 302–303, 332–349, 412, 415, 450, 458, 532, 574–578
sequence.py	723	217	70%	11–14, 101–111, 132–145, 183, 248–251, 292, 319, 336, 384, 412, 439–444, 481, 497, 588, 610, 651–654, 708, 740, 751–752, 758, 769, 775, 777, 785, 818–826, 847–869, 912, 914, 917, 943–944, 947–950, 986–996, 1034–1035, 1071–1072, 1098, 1104, 1107, 1144, 1265–1278, 1301, 1329, 1351–1353, 1374, 1405, 1416–1429, 1441–1452, 1498–1499, 1508–1526, 1550, 1580–1588, 1620–1730, 1759, 1773–1783, 1795
write_seq.py	172	8	95%	41, 65, 68–75
/home/runner/.local/lib/python3.12/site-packages/pypulseq/utils
cumsum.py	14	1	93%	17
safe_pns_prediction.py	126	113	10%	50–87, 102–189, 197–214, 222, 244–250, 279–286, 310–336, 344–383, 396–411, 415
tracing.py	16	6	62%	33–34, 42, 54–55, 75
/home/runner/.local/lib/python3.12/site-packages/pypulseq/utils/siemens
asc_to_hw.py	58	53	9%	21–28, 48–106
readasc.py	48	45	6%	25–100
TOTAL	4360	1520	65%

Tests	Skipped	Failures	Errors	Time
1185	18 💤	0 ❌	0 🔥	2m 53s ⏱️

[fzimmermann89]

about time 👍