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Fix issue #255 #269

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Merged
merged 1 commit into from
Jul 30, 2024
Merged

Fix issue #255 #269

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8 changes: 3 additions & 5 deletions tree/iqtree.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -2723,7 +2723,10 @@ void IQTree::refineBootTrees() {
boot_tree->constraintTree.readConstraint(constraintTree);
}

// set likelihood kernel
boot_tree->setParams(params);
boot_tree->setLikelihoodKernel(sse);
boot_tree->setNumThreads(num_threads);

// 2019-06-03: bug fix setting part_info properly
if (boot_tree->isSuperTree())
Expand All @@ -2738,11 +2741,6 @@ void IQTree::refineBootTrees() {
else
boot_tree->getModelFactory()->restoreCheckpoint();

// set likelihood kernel
boot_tree->setParams(params);
boot_tree->setLikelihoodKernel(sse);
boot_tree->setNumThreads(num_threads);

// load the current ufboot tree
// 2019-02-06: fix crash with -sp and -bnni
if (isSuperTree())
Expand Down