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Testing
Jasmine Dumas edited this page Oct 8, 2015
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| GSE Number | GPL Platform | Probe | Time col | Outcome col | Time edit | Outcome edit | p-value | screenshot |
|---|---|---|---|---|---|---|---|---|
| GSE19915 | GPL3883 | 4465 | characteristics_ch1.4 | characteristics_ch1.3 | "follow up time (months): " | "dead of disease: NO" = 0, "dead of disease: YES" = 1 | 0.7801 | KM plot |
| GSE48276 | GPL14951 | ILMN_1762337 | characteristics_ch1.10 | characteristics_ch1.9 | "survival (mo): " | "dss censor: censored" = 0, "dss censor: uncensored" = 1 | 0.1546 | KM plot |
| GSE48075 | GPL6947 | ILMN_1762337 | characteristics_ch1.8 | characteristics_ch1.7 | "survival (mo): " | "dss censor: uncensored" = 1, "dss censor: censored" = 0 | 0.8503 | KM plot |
| GSE58812 | GPL570 | 229819_at |
| GSE Number | GPL Platform | Probe | log2 | DE cols | DE Groups | p-value | screenshot |
|---|---|---|---|---|---|---|---|
| GSE19915 | GPL3883 | 4465 | F | characteristics_ch1.1 | c("tumor stage: T1","tumor stage: T3","tumor stage: Ta","tumor stage: Tx") | 0.166 | GSE19915 |
| GSE48276 | GPL14951 | ILMN_1762337 | F | characteristics_ch1.6 | c("race: Asian","race: Black","race: Caucasian","race: Hispanic","race: White") | 0.683 | GSE48276 |
| GSE48075 | GPL6947 | ILMN_1762337 | F | characteristics_ch1 | c("cstage: cT1","cstage: cT1N0M0","cstage: cTa/isN0M0","cstage: cTisN0M0") | 0.607 | GSE48075 |
| GSE58812 | GPL570 | 229819_at | T | characteristics_ch1.2 | c("meta: 0", "meta: 1") | FC = 0.94, P = 0.573 | GSE58812 |
| GSE21501 | GPL4133 | 25737 | F | characteristics_ch2.2 | c("t stage: ","t stage: 1","t stage: 2","t stage: 3","t stage: 4") | 0.003 | GSE21501 |
| GSE24450 | GPL6947 | ILMN_1762337 | T | characteristics_ch1.3 | c("bddm status: 0 (no event or censored)","bddm status: 1 (breast cancer death or distant metastasis)") | FC = 0.99, P =0.033 | GSE24450 |
| GSE17536 | GPL570 | 229819_at | T | characteristics_ch1.2 | c("ethnicity: black","ethnicity: caucasian","ethnicity: hispanic","ethnicity: other (not caucasian, black, or hispanic)") | 0.3 | GSE17536 |
| GSE22220 | GPL6098 | 5340670 | T | characteristics_ch1.5 | c("tumour grade: .","tumour grade: 1","tumour grade: 2","tumour grade: 3") | 0.377 | GSE22220 |
| GSE25065 | GPL96 | 219488_at | F | characteristics_ch1.9 | c("grade: 1","grade: 2","grade: 3") | 0.2 | GSE25065 |
| GSE10846 | GPL570 | 1558450_at | T | characteristics_ch1 | c("Gender: female", "Gender: male") | FC = 1.01. P = 0.392 | GSE10846 |
