Global Natural Products Social Molecular Networking (GNPS, http://gnps.ucsd.edu/) is a web-based mass spectrometry ecosystem that aims to be an open-access knowledge base for community-wide organization and sharing of raw, processed or identified tandem mass (MS/MS) spectrometry data. GNPS aids in identification and discovery throughout the entire life cycle of data; from initial data acquisition/analysis to post publication.
The GNPSDocumentation can be found at https://ccms-ucsd.github.io/GNPSDocumentation/.
Help us improving GNPS Documentation !
- For informations/feature request, please open an "Issue" on the present GitHub repository.
- To contribute to the GNPS documentation, fork the CCMS-UCSD/GNPSDocumentation repository, and make a "Pull Request" with your edits.
GNPS Workflows are available on the following repository: https://github.com/CCMS-UCSD/GNPS_Workflows
Visualize the status of all GNPS Workflows: https://stats.uptimerobot.com/Am4PLUWn3
- Install miniconda3 (https://docs.conda.io/en/latest/miniconda.html)
- Create conda environment
conda create -n mkdocs
- Install requirements
conda install -c conda-forge mkdocs
conda install -c conda-forge mkdocs-material
pip install mkdocs-minify-plugin
- Serve locally
mkdocs serve
- Deploy to github pages
mkdocs gh-deploy
Wang, M. et al. Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. Nat. Biotechnol. 34, 828–837 (2016). https://www.nature.com/articles/nbt.3597