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Pull requests: nf-core/scrnaseq

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Pull requests list

Refactor iGenomes handling to expose params object pipeline-wide Ready for review
#483 opened Jul 26, 2025 by LeonHafner Loading…
11 tasks
@LeonHafner
3
Implement skip_multiqc parameter available in nextflow.config
#479 opened Jul 22, 2025 by Mridul-Chaudhary Loading…
1
Important! Template update for nf-core/tools v3.3.2
#474 opened Jul 8, 2025 by nf-core-bot Loading…
Pin anndataR to v0.1.0
#472 opened Jun 23, 2025 by lazappi Loading…
1 of 11 tasks
1
Add support for using GFF instead of GTF enhancement New feature or request
#451 opened Mar 21, 2025 by milos7250 Loading…
8 of 11 tasks
@milos7250
1
Added VDJ concatenation modules and added MuData object
#435 opened Feb 27, 2025 by saraterzo Loading…
6 of 11 tasks
4.1.0
29
Altos auto detection chemistry modules
#391 opened Nov 4, 2024 by wzheng0520 • Draft
11 tasks
4.1.0
3
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