OpenAlea.Adel

Authors : C. Fournier, C. Pradal, B. Andrieu

Contributors :

: - M Abichou (wheat parameteristion, documentation, plantgen), - C Chambon (plantgen, documentation, povray, fit, io widgets)

Institutes : INRAe, CIRAD

Status : R and Python package (+ L-system)

License : Cecill-C

About

Description

OpenAlea.Adel (Architectural model of DEvelopment based on L-systems) allows to simulate the 3D architectural development of the shoot of gramineaous plant.

Content

The package hosts generic data structure and simulation tools for gramineaous plants(Fournier & Pradal, unpublished), the Adel-Maize (Fournier & Andrieu, 1998), Adel-Wheat (Fournier et al. 2003) models, together with the wheat parameterization model of Abichou et al. (2013) and the plastic leaf model of Fournier & Pradal (2012)

Installation

python setup.py install

Requirements

• OpenAlea.Deploy
• OpenAlea.Mtg
• OpenAlea.core
• OpenAlea.visualea
• OpenAlea.PlantGl
• NumPy
• Scipy
• MatplotLib
• Pandas
• Rpy2

Installation with mamba

Create an environment:

mamba create -n adel -c conda-forge -c openalea3 openalea.adel -y

Activate the environment:

mamba activate adel

Locate RHOME:

R RHOME

Set R_HOME to the R HOME dir returned above:

mamba env config vars set R_HOME=r_home_dir_returned_by_rhome

Installation from source

Create an environment

mamba env create -n adel -f conda/environment.yml

Set R_HOME (see above)

Install adel

git clone https://github.com/openalea-incubator/adel.git 
cd adel
pip install -e .