Meta-ticket: Use system Jupyter notebook / JupyterLab

[mkoeppe]

We wish to support all combinations of the following scenarios:

1. Running notebook installed in SAGE_LOCAL from SPKG
2. Running notebook installed in the system python, or in some venv unrelated to Sage
3. Running notebook on a different host (which has no Sage installation), connecting to the Sage Jupyter kernel (using ssh, or https://pypi.org/project/jupyter-kernel-gateway, or ...)

A. Sage-the-distribution
B. Distribution packaging of Sage (Debian, Conda, ...)
C. Pip-installed sagelib (#30036)

The following data items are relevant:

i. The kernelspec
iii. threejs, jsmol, mathjax data
iiiii. Built Sage documentation

The following installation locations are relevant:

a. data installed with sagelib within the Sage venv, such as src/sage/ext_data
b. data installed within SAGE_LOCAL as part of Sage-the-distribution
c. data installed as "resources" associated with the kernelspec, on the host where notebook runs (see jupyter kernelspec list)
d. data installed as Jupyter nbextensions on the host where notebook runs (see jupyter nbextension list)

Tickets for Sage 9.2:

• Minimal fix for broken jupyter notebook #30299
• Upgrade Jupyter notebook to latest (6.1.1) and its dependencies to latest #26919

Tickets for Sage 9.3:

• Fix broken symlink to documentation in the Sage jupyter kernelspec #30903
• Doc: Add instructions on how to run the SageMath jupyter kernel in a system jupyter notebook or jupyterlab #30476
• Switch jsmol to jupyter-jsmol #30315
• Remove mathjax configuration/symlink from jupyter notebook #31035
• Add package argon2-cffi (dependency of Jupyter notebook) #31279
• Upgrade ipywidgets to 7.6.3 #31328
• widgetsnbextension should not depend on notebook #31278
• Add "configure --disable-notebook"; show descriptions of optional packages in "configure --help" #30383
• Document installing sagemath kernel without copying documentation #31620

Tickets for Sage 9.4:

• Add package ipympl - Makes interactive features of matplotlib available also in JupyterLab #31179
• Versioned installation of threejs #30972

Completed in Sage 10.x:

• System package information and spkg-configure for mathjax #30296

Open:

• Document running Sage + Jupyter in WSL, with a browser in Windows #31156
• Doc: Add instructions on how to run the SageMath jupyter kernel in WSL, add as a kernel to Jupyter running natively in Windows #31157
• Support jupyter-qtconsole #31369
• Repackage Sage's cropped threejs as a pip-installable package (nbextension) jupyter-threejs-sage #30123
• System package information, spkg-configure for Jupyter "notebook" package, "rst2ipynb", and dependencies #30124
• Rewrite jupyter kernel installation code using KernelSpecManager, create kernel install script (entry point) #30298
• Doc: Add instructions how to run a remote SageMath jupyter kernel #30313
• configure --disable-notebook: Also disable jupyter_sphinx #38224

CC: @antonio-rojas @kiwifb @slel @nbruin @paulmasson @egourgoulhon @kwankyu @jcamp0x2a @williamstein @mezzarobba

Component: user interface

Keywords: sd110, sd111

Issue created by migration from https://trac.sagemath.org/ticket/30306

[mkoeppe]

Description changed:

--- 
+++ 
@@ -4,7 +4,7 @@
 
 2. Running `notebook` installed in the system python, or in some venv unrelated to Sage
 
-3. Running `notebook` on a different host (which has no Sage installation), connecting to the Sage Jupyter kernel
+3. Running `notebook` on a different host (which has no Sage installation), connecting to the Sage Jupyter kernel (using ssh, or https://pypi.org/project/jupyter-kernel-gateway, or ...)
 
 A. Sage-the-distribution
 

[kwankyu]

Description changed:

--- 
+++ 
@@ -28,5 +28,4 @@
 
 - #26919 (Upgrade to Jupyter notebook 5.7.10 or 6.1.0 ....)
 
-- #30124 (System information, spkg-configure for Jupyter "notebook" package and dependencies)
 

[mkoeppe]

Description changed:

--- 
+++ 
@@ -12,7 +12,23 @@
 
 C. Pip-installed sagelib (#30036)
 
+The following data items are relevant:
 
+i. The kernelspec
+
+iii. threejs, jsmol, mathjax data
+
+iiiii. Built sage documentation
+
+The following installation locations are relevant:
+
+a. data installed with sagelib within the Sage venv, such as `src/sage/ext_data`
+
+b. data installed within `SAGE_LOCAL` as part of Sage-the-distribution 
+
+c. data installed as "resources" associated with the kernelspec, on the host where notebook runs
+
+d. data installed as jupyter nbextensions on the host where notebook runs
 
 Tickets:
 

[mkoeppe]

Description changed:

--- 
+++ 
@@ -26,9 +26,9 @@
 
 b. data installed within `SAGE_LOCAL` as part of Sage-the-distribution 
 
-c. data installed as "resources" associated with the kernelspec, on the host where notebook runs
+c. data installed as "resources" associated with the kernelspec, on the host where notebook runs (see `jupyter kernelspec list`)
 
-d. data installed as jupyter nbextensions on the host where notebook runs
+d. data installed as jupyter nbextensions on the host where notebook runs (see `jupyter nbextension list`)
 
 Tickets:
 

[mkoeppe]

Description changed:

--- 
+++ 
@@ -44,4 +44,5 @@
 
 - #26919 (Upgrade to Jupyter notebook 5.7.10 or 6.1.0 ....)
 
+- #30313 (Doc: Add instructions how to run a remote [SageMath](../wiki/SageMath) jupyter kernel)
 

[mkoeppe]

Description changed:

--- 
+++ 
@@ -46,3 +46,5 @@
 
 - #30313 (Doc: Add instructions how to run a remote [SageMath](../wiki/SageMath) jupyter kernel)
 
+- #30315 Switch jsmol to jupyter-jsmol, make jmol optional
+

[mkoeppe]

Description changed:

--- 
+++ 
@@ -32,6 +32,8 @@
 
 Tickets:
 
+- #30476 - Doc: Add instructions on how to run the [SageMath](../wiki/SageMath) jupyter kernel in a system jupyter notebook or jupyterlab
+
 - #30124 (System information, spkg-configure for Jupyter "notebook" package and dependencies)
 
 - #30123 (Repackage Sage's cropped threejs as a pip-installable package jupyter-threejs-minimal)

[mkoeppe]

Changed keywords from none to sd110

[mkoeppe]

Changed keywords from sd110 to sd110, sd111

[mkoeppe]

Description changed:

--- 
+++ 
@@ -34,6 +34,8 @@
 
 - #30476 - Doc: Add instructions on how to run the [SageMath](../wiki/SageMath) jupyter kernel in a system jupyter notebook or jupyterlab
 
+- #30972 - Symlinks and system packages
+
 - #30124 (System information, spkg-configure for Jupyter "notebook" package and dependencies)
 
 - #30123 (Repackage Sage's cropped threejs as a pip-installable package jupyter-threejs-minimal)

[mkoeppe]

Description changed:

--- 
+++ 
@@ -34,11 +34,11 @@
 
 - #30476 - Doc: Add instructions on how to run the [SageMath](../wiki/SageMath) jupyter kernel in a system jupyter notebook or jupyterlab
 
-- #30972 - Symlinks and system packages
+- #30972 - Versioned installation of `threejs`
 
 - #30124 (System information, spkg-configure for Jupyter "notebook" package and dependencies)
 
-- #30123 (Repackage Sage's cropped threejs as a pip-installable package jupyter-threejs-minimal)
+- #30123 (Repackage Sage's cropped threejs as a pip-installable package jupyter-threejs-sage)
 
 - #30298 (Rewrite jupyter kernel installation code using KernelSpecManager, create kernel install script (entry point))
 

[mkoeppe]

Description changed:

--- 
+++ 
@@ -34,6 +34,8 @@
 
 - #30476 - Doc: Add instructions on how to run the [SageMath](../wiki/SageMath) jupyter kernel in a system jupyter notebook or jupyterlab
 
+- #31156 - Doc: Add instructions how to run Sage + Jupyter notebook in WSL, browser in Windows
+
 - #30972 - Versioned installation of `threejs`
 
 - #30124 (System information, spkg-configure for Jupyter "notebook" package and dependencies)

[mkoeppe]

Description changed:

--- 
+++ 
@@ -36,6 +36,8 @@
 
 - #31156 - Doc: Add instructions how to run Sage + Jupyter notebook in WSL, browser in Windows
 
+- #31157 Doc: Add instructions on how to run the [SageMath](../wiki/SageMath) jupyter kernel in WSL, add as a kernel to Jupyter running natively in Windows
+
 - #30972 - Versioned installation of `threejs`
 
 - #30124 (System information, spkg-configure for Jupyter "notebook" package and dependencies)

[mkoeppe]

Description changed:

--- 
+++ 
@@ -30,29 +30,23 @@
 
 d. data installed as jupyter nbextensions on the host where notebook runs (see `jupyter nbextension list`)
 
-Tickets:
+Tickets for Sage 9.2:
+
+- #30299 (Minimal fix for broken jupyter notebook)
+- #26919 (Upgrade to Jupyter notebook 5.7.10 or 6.1.0 ....)
+
+Tickets for Sage 9.3:
 
 - #30476 - Doc: Add instructions on how to run the [SageMath](../wiki/SageMath) jupyter kernel in a system jupyter notebook or jupyterlab
-
+- #30315 Switch jsmol to jupyter-jsmol, make jmol optional
 - #31156 - Doc: Add instructions how to run Sage + Jupyter notebook in WSL, browser in Windows
-
 - #31157 Doc: Add instructions on how to run the [SageMath](../wiki/SageMath) jupyter kernel in WSL, add as a kernel to Jupyter running natively in Windows
-
 - #30972 - Versioned installation of `threejs`
-
+- #31179 - Add package `ipympl` - Makes interactive features of matplotlib available also in JupyterLab
 - #30124 (System information, spkg-configure for Jupyter "notebook" package and dependencies)
-
 - #30123 (Repackage Sage's cropped threejs as a pip-installable package jupyter-threejs-sage)
-
 - #30298 (Rewrite jupyter kernel installation code using KernelSpecManager, create kernel install script (entry point))
-
 - #30296 (System package information and spkg-configure for mathjax)
-
-- #30299 (Minimal fix for broken jupyter notebook)
-
-- #26919 (Upgrade to Jupyter notebook 5.7.10 or 6.1.0 ....)
-
 - #30313 (Doc: Add instructions how to run a remote [SageMath](../wiki/SageMath) jupyter kernel)
 
-- #30315 Switch jsmol to jupyter-jsmol, make jmol optional
 

[mkoeppe]

Description changed:

--- 
+++ 
@@ -37,6 +37,7 @@
 
 Tickets for Sage 9.3:
 
+- #30903 Fix broken symlink to documentation in the Sage jupyter kernelspec
 - #30476 - Doc: Add instructions on how to run the [SageMath](../wiki/SageMath) jupyter kernel in a system jupyter notebook or jupyterlab
 - #30315 Switch jsmol to jupyter-jsmol, make jmol optional
 - #31156 - Doc: Add instructions how to run Sage + Jupyter notebook in WSL, browser in Windows