Replace SEEK with FAIRDOM-SEEK in menus and page titles

_data/sidebars/tech.yml

@@ -9,7 +9,7 @@ subitems:
     subitems:
       - title: Contributing introduction
         url: /tech/contributing
-      - title: Contributing to SEEK
+      - title: Contributing to FAIRDOM-SEEK
         url: /tech/contributing-to-seek
       - title: Reporting Bugs and raising Feature Requests
         url: /tech/reporting-bugs-and-features
@@ -19,13 +19,13 @@ subitems:
         url: /tech/style-guide
   - title: Installing
     subitems:
-      - title: Installing SEEK
+      - title: Installing FAIRDOM-SEEK
         url: /tech/install
-      - title: Installing SEEK for other Linux distributions
+      - title: Installing FAIRDOM-SEEK for other Linux distributions
         url: /tech/other-distributions
-      - title: Installing SEEK in a production environment
+      - title: Installing FAIRDOM-SEEK in a production environment
         url: /tech/install-production
-      - title: Installing SEEK under a sub URI
+      - title: Installing FAIRDOM-SEEK under a sub URI
         url: /tech/install-on-suburi
       - title: Setting up the Apache Solr Search Engine
         url: /tech/setting-up-solr
@@ -45,23 +45,23 @@ subitems:
         url: /tech/docker/building-images
   - title: Administering
     subitems:
-      - title: Administration of SEEK
+      - title: Administration of FAIRDOM-SEEK
         url: /tech/administration
       - title: Providing your own Assay and Technology types
         url: /tech/assay-types
-      - title: Backing up SEEK
+      - title: Backing up FAIRDOM-SEEK
         url: /tech/backups
       - title: Upgrading
         subitems:
-          - title: Upgrading SEEK
+          - title: Upgrading FAIRDOM-SEEK
             url: /tech/upgrading
           - title: Upgrades between earlier versions
             url: /tech/earlier-upgrades
       - title: Checksum fingerprints
         url: /tech/investigation-checksum
 #      - title: openSEEK
 #        url: /tech/openseek
-      - title: Configuring SEEK for Virtuoso
+      - title: Configuring FAIRDOM-SEEK for Virtuoso
         url: /tech/setting-up-virtuoso
 #      - title: Using Teaspoon
 #        url: /tech/using-teaspoon

_data/sidebars/userguide.yml

@@ -8,13 +8,13 @@ subitems:
     - title: Browsing content
       url: /help/user-guide/browsing 
   - title: Profile
-    description: Registering and logging into SEEK, managing your account and identities, editing your profile.
+    description: Registering and logging into FAIRDOM-SEEK, managing your account and identities, editing your profile.
     subitems:
     - title: Registration and Login
       subitems:
-      - title: Registering in SEEK
+      - title: Registering in FAIRDOM-SEEK
         url: /help/user-guide/registering
-      - title: Logging into SEEK via LS Login
+      - title: Logging into FAIRDOM-SEEK via LS Login
         url: /help/user-guide/aai
       - title: Managing your identities/alternative login methods
         url: /help/user-guide/managing-identities
@@ -68,7 +68,7 @@ subitems:
     subitems: 
     - title: Introduction to the ISA structure
       subitems:
-      - title: Visualising ISA structure in SEEK
+      - title: Visualising ISA structure in FAIRDOM-SEEK
         url: /help/user-guide/isa-overview
       - title: Generating the ISA structure
         url: /help/user-guide/generating-the-isa-structure
@@ -102,9 +102,9 @@ subitems:
   -
     #hr: true
     title: Assets
-    description: Adding different types of assets to SEEK, creating new asset versions.
+    description: Adding different types of assets to FAIRDOM-SEEK, creating new asset versions.
     subitems:
-    - title: Adding assets (data, models, SOPs, publications) to SEEK
+    - title: Adding assets (data, models, SOPs, publications)
       url: /help/user-guide/adding-assets
     - title: Data files 
       subitems:
@@ -146,7 +146,7 @@ subitems:
     title: Samples
     description: Creating and browsing samples, and samples in ISA-JSON compliant experiments.
     subitems:
-    - title: Introduction
+    - title: Introduction to samples
       url: /help/user-guide/samples
     - title: Sample types
       description: Creating and browsing samples, and samples in ISA-JSON compliant experiments.
@@ -179,16 +179,16 @@ subitems:
   - 
     #hr: true
     title: Integrations
-    description: Using SEEK and openBIS or Copasi, compliance with ISA-JSON schemas.
+    description: Using FAIRDOM-SEEK and openBIS or Copasi, compliance with ISA-JSON schemas.
     subitems:
-    - title: Using SEEK with openBIS
+    - title: Using FAIRDOM-SEEK with openBIS
       url: /help/user-guide/openbis
-    - title: Using Copasi with SEEK
+    - title: Using Copasi with FAIRDOM-SEEK
       url: /help/user-guide/copasi-button
   -
     #hr: true
     title: User guide for API
-    description: Introduction to the SEEK API.
+    description: Introduction to the FAIRDOM-SEEK API.
     subitems:
     - title: API Introduction
       url: /help/user-guide/api
@@ -200,13 +200,13 @@ subitems:
         url: /help/archived
       - title: Data and model annotation
         subitems:
-         - title: Minimum metadata guidelines for SEEK
+         - title: Minimum metadata guidelines for FAIRDOM-SEEK
            url: /help/metadata-guidelines
          - title: A Quick guide to using the ISA structure
            url: /help/isa-guide
          - title: ISA best practice
            url: /help/isa-best-practice
-         - title: "Transcriptomics: guidelines for SEEK templates"
+         - title: "Transcriptomics: guidelines for FAIRDOM-SEEK templates"
            url: /help/transcriptomics-guidelines
          - title: Proteomics guidelines
            url: /help/proteomics-guidelines

help/metadata-guidelines.md

@@ -1,5 +1,5 @@
 ---
-title: Minimum metadata guidelines for SEEK
+title: Minimum metadata guidelines for FAIRDOM-SEEK
 redirect_from: "/metadata-guidelines.html"
 ---
 

help/transcriptomics-guidelines.md

@@ -1,5 +1,5 @@
 ---
-title: "Transcriptomics: Guidelines for SEEK templates"
+title: "Transcriptomics: Guidelines for FAIRDOM-SEEK templates"
 redirect_from: "/transcriptomics-guidelines.html"
 ---
 

help/user-guide/adding-assets.md

@@ -1,5 +1,5 @@
 ---
-title: Adding assets (Data, Models, SOPs, Presentations, Documents) to SEEK
+title: Adding assets (Data, Models, SOPs, Presentations, Documents) to FAIRDOM-SEEK
 ---
 
 To add a data file to SEEK, select Create from the menu bar, and select the appropriate asset from the drop down menu.

help/user-guide/browsing.md

@@ -1,5 +1,5 @@
 ---
-title: Browsing content on SEEK
+title: Browsing content on FAIRDOM-SEEK
 ---
 
 

help/user-guide/copasi-button.md

@@ -1,5 +1,5 @@
 ---
-title: Using Copasi in SEEK
+title: Using Copasi in FAIRDOM-SEEK
 ---
 
 You can download a public SBML format **model** to a locally installed Copasi application and start the simulation in Copasi.

help/user-guide/general-attributes.md

@@ -1,5 +1,5 @@
 ---
-title: Generic linking variables in SEEK
+title: Generic linking variables in FAIRDOM-SEEK
 redirect_from: "/help/user-guide/generic-linking-variables.html"
 ---
 

help/user-guide/openbis.md

@@ -1,5 +1,5 @@
 ---
-title: Using SEEK with openBIS
+title: Using FAIRDOM-SEEK with openBIS
 ---
 
 ## Enabling openBIS in SEEK

help/user-guide/registering.md

@@ -1,5 +1,5 @@
 ---
-title: Registering in SEEK
+title: Registering in FAIRDOM-SEEK
 ---
 
 In order to register yourself in SEEK, you need to click the Register button in the top right hand corner of SEEK.

tech/administration.md

@@ -1,5 +1,5 @@
 ---
-title: Administration of SEEK
+title: Administration of FAIRDOM-SEEK
 redirect_from: "/administration.html"
 ---
 

tech/backups.md

@@ -1,5 +1,5 @@
 ---
-title: Backing up SEEK
+title: Backing up FAIRDOM-SEEK
 redirect_from: "/backups.html"
 ---
 

tech/contributing-to-seek.md

@@ -1,5 +1,5 @@
 ---
-title: Contributing to SEEK
+title: Contributing to FAIRDOM-SEEK
 redirect_from: "/contributing-to-seek.html"
 ---
 

tech/install-on-suburi.md

@@ -1,5 +1,5 @@
 ---
-title: Installing SEEK under a sub URI
+title: Installing FAIRDOM-SEEK under a sub URI
 redirect_from: "/install-on-suburi.html"
 ---
 

tech/install-production.md

@@ -1,5 +1,5 @@
 ---
-title: Installing SEEK in a production environment
+title: Installing FAIRDOM-SEEK in a production environment
 redirect_from: "/install-production.html"
 ---
 

tech/install.md

@@ -1,5 +1,5 @@
 ---
-title: Installing SEEK
+title: Installing FAIRDOM-SEEK
 redirect_from: "/install.html"
 ---
 

tech/other-distributions.md

@@ -1,5 +1,5 @@
 ---
-title: Installing SEEK for other Linux distributions
+title: Installing FAIRDOM-SEEK for other Linux distributions
 redirect_from: "/other-distributions.html"
 ---
 

tech/setting-up-virtuoso.md

@@ -1,5 +1,5 @@
 ---
-title: Configuring SEEK for Virtuoso
+title: Configuring FAIRDOM-SEEK for Virtuoso
 redirect_from: "/setting-up-virtuoso.html"
 ---