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@sheynkman-lab

Lab for Proteoform Systems Biology

At the Sheynkman Lab, we study disease-relevant protein forms, or “proteoforms”, by integrating cutting-edge analytical and computational approaches from genomi

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  1. Long-Read-Proteogenomics Long-Read-Proteogenomics Public template

    A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

    Python 46 17

  2. Long-Read-Proteogenomics-Analysis Long-Read-Proteogenomics-Analysis Public

    Jupyter Notebook 5 1

  3. splice-event-to-isoform-pipeline splice-event-to-isoform-pipeline Public

    Shay's splice event to isoform integration pipeline

    Python 3 1

  4. Mohi_MDS_LRP Mohi_MDS_LRP Public

    This repository is for LRP analysis for the Mohi Lab project focused on discovering proteoforms related to MDS.

    Python 2 1

  5. SQANTI3_protein SQANTI3_protein Public

    Forked from ConesaLab/SQANTI3

    Repository of SQANTI3 tool for Quality Control of Long-Read Defined Transcriptomes

    Python 1

  6. biosurfer biosurfer Public

    "Surf" the biological network, from genome to transcriptome to proteome and back to gain insights into human disease biology.

    Python 1

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