Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile

This repository contains a workflow to perform genome-environment association analysis with redundancy analysis.

Random scripts for dealing with ddRAD data, including output from pyRAD

Plethodontid salamander DNA capture kit

Repository for "Hybridization and inbreeding affect the survival of a critically endangered coral"

ddRaptor helps you choose optimal ddRAD enzyme pairs by simulating in-silico digests, counting size-filtered fragments, and visualizing results in tables and heatmaps.

Code used for a RADseq/GBS (or, more generally, reduced representation sequencing) optimization pilot experiment with several Antarctic animal species.

This repository contains scripts for 3D and 4D demographic models using the program Moments