metabarcoding

Here are 6 public repositories matching this topic...

nf-core / ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

workflow pipeline nextflow metagenomics pacbio edna microbiome iontorrent illumina metabarcoding 16s rrna its 18s taxonomic-classification amplicon-sequencing qiime2 nf-core taxonomic-profiling

Updated Jul 21, 2025
Nextflow

nf-core / detaxizer

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A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

workflow nanopore pipeline nextflow shotgun filter metagenomics edna microbiome fastq metabarcoding long-reads taxonomic-classification de-identification nf-core short-reads taxonomic-profiling decontamination

Updated Aug 8, 2025
Nextflow

ifremer-bioinformatics / samba

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Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

workflow pipeline nextflow edna metabarcoding 16s rrna 18s

Updated Jun 28, 2023
Nextflow

vmikk / NextITS

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A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio

pipeline nextflow pacbio fungi metabarcoding its eukaryotes internal-transcribed-spacer

Updated Aug 14, 2025
Nextflow

Newgenes1031 / 16S_PacBio_CCS_Metabarcoding_analysis_protocol

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This is an easy guide of PacBio 16S metabarcoding analysis for amateur bioinformatician

metabarcoding 16s-rrna pacbio-hifi-sequencing-reads

Updated Jun 25, 2025
Nextflow

bio-raum / BarBeQuE

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BARcode BEnchmarking and QUality Evaluation

benchmarking nextflow metabarcoding

Updated Jul 2, 2025
Nextflow

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metabarcoding

Here are 6 public repositories matching this topic...

nf-core / ampliseq

nf-core / detaxizer

ifremer-bioinformatics / samba

vmikk / NextITS

Newgenes1031 / 16S_PacBio_CCS_Metabarcoding_analysis_protocol

bio-raum / BarBeQuE

Improve this page

Add this topic to your repo