Replacement for #2039 #2040
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Replacement for #2039 #2040
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yebai
merged commit b3f6005
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compathelper/new_version/2023-06-20-00-28-18-752-01921173878
yebai
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Jul 27, 2023
* CompatHelper: bump compat for Bijectors to 0.13, (keep existing compat) * Update Project.toml * Replacement for #2039 (#2040) * Fix testset for external samplers * Update abstractmcmc.jl * Update test/contrib/inference/abstractmcmc.jl Co-authored-by: Tor Erlend Fjelde <[email protected]> * Update test/contrib/inference/abstractmcmc.jl Co-authored-by: Tor Erlend Fjelde <[email protected]> * Update FillArrays compat to 1.4.1 (#2035) * Update FillArrays compat to 1.4.0 * Update test compat * Try to enable ReverseDiff tests * Update Project.toml * Update Project.toml * Bump version * Revert dependencies on FillArrays (#2042) * Update Project.toml * Update Project.toml * Fix redundant definition of `getstats` (#2044) * Fix redundant definition of `getstats` * Update Inference.jl * Revert "Update Inference.jl" This reverts commit e4f51c2. * Bump version --------- Co-authored-by: Hong Ge <[email protected]> * Transfer some test utility function into DynamicPPL (#2049) * Update OptimInterface.jl * Only run optimisation tests in numerical stage. * fix function lookup after moving functions --------- Co-authored-by: Xianda Sun <[email protected]> * Move Optim support to extension (#2051) * Move Optim support to extension * More imports * Update Project.toml --------- Co-authored-by: Hong Ge <[email protected]> --------- Co-authored-by: CompatHelper Julia <[email protected]> Co-authored-by: haris organtzidis <[email protected]> Co-authored-by: Tor Erlend Fjelde <[email protected]> Co-authored-by: David Widmann <[email protected]> Co-authored-by: Xianda Sun <[email protected]> Co-authored-by: Cameron Pfiffer <[email protected]>
yebai
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Aug 16, 2023
…t) (#2018) * CompatHelper: bump compat for Bijectors to 0.13, (keep existing compat) * Update Project.toml * Replacement for #2039 (#2040) * Fix testset for external samplers * Update abstractmcmc.jl * Update test/contrib/inference/abstractmcmc.jl Co-authored-by: Tor Erlend Fjelde <[email protected]> * Update test/contrib/inference/abstractmcmc.jl Co-authored-by: Tor Erlend Fjelde <[email protected]> * Transfer some test utility function into DynamicPPL (#2049) * Update OptimInterface.jl * Only run optimisation tests in numerical stage. * fix function lookup after moving functions --------- Co-authored-by: Xianda Sun <[email protected]> * Remove tracker tests. * Update Project.toml * Update Project.toml * Update Project.toml --------- Co-authored-by: CompatHelper Julia <[email protected]> Co-authored-by: Hong Ge <[email protected]> Co-authored-by: haris organtzidis <[email protected]> Co-authored-by: Tor Erlend Fjelde <[email protected]> Co-authored-by: Xianda Sun <[email protected]> Co-authored-by: Cameron Pfiffer <[email protected]>
yebai
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Aug 16, 2023
* first draft * abstractcontext + tests * bug * externalsampler() in tests * Name Tupple problems * moving stuff to DynamicPPL RP * using new DynamicPPL PR * mistakenly removed line * specific constructors * no StaticMH RWMH * Bump bijectors compat (#2052) * CompatHelper: bump compat for Bijectors to 0.13, (keep existing compat) * Update Project.toml * Replacement for #2039 (#2040) * Fix testset for external samplers * Update abstractmcmc.jl * Update test/contrib/inference/abstractmcmc.jl Co-authored-by: Tor Erlend Fjelde <[email protected]> * Update test/contrib/inference/abstractmcmc.jl Co-authored-by: Tor Erlend Fjelde <[email protected]> * Update FillArrays compat to 1.4.1 (#2035) * Update FillArrays compat to 1.4.0 * Update test compat * Try to enable ReverseDiff tests * Update Project.toml * Update Project.toml * Bump version * Revert dependencies on FillArrays (#2042) * Update Project.toml * Update Project.toml * Fix redundant definition of `getstats` (#2044) * Fix redundant definition of `getstats` * Update Inference.jl * Revert "Update Inference.jl" This reverts commit e4f51c2. * Bump version --------- Co-authored-by: Hong Ge <[email protected]> * Transfer some test utility function into DynamicPPL (#2049) * Update OptimInterface.jl * Only run optimisation tests in numerical stage. * fix function lookup after moving functions --------- Co-authored-by: Xianda Sun <[email protected]> * Move Optim support to extension (#2051) * Move Optim support to extension * More imports * Update Project.toml --------- Co-authored-by: Hong Ge <[email protected]> --------- Co-authored-by: CompatHelper Julia <[email protected]> Co-authored-by: haris organtzidis <[email protected]> Co-authored-by: Tor Erlend Fjelde <[email protected]> Co-authored-by: David Widmann <[email protected]> Co-authored-by: Xianda Sun <[email protected]> Co-authored-by: Cameron Pfiffer <[email protected]> * Bugfixes. * Add TODO. * Update mh.jl * Update Inference.jl * Removed obsolete exports. * removed unnecessary import of extract_priors * added missing ) in MH tests * fixed incorrect referneces to AdvancedMH in tests * improve ESLogDensityFunction * remove hardcoding of SimpleVarInfo * added fixme comment * minor style changes * fixed issues with MH with RandomWalkProposal being used as an external sampler * fixed accidental typo * move definitions of unflatten for NamedTuple * improved TODO * Update Project.toml --------- Co-authored-by: Hong Ge <[email protected]> Co-authored-by: CompatHelper Julia <[email protected]> Co-authored-by: haris organtzidis <[email protected]> Co-authored-by: Tor Erlend Fjelde <[email protected]> Co-authored-by: David Widmann <[email protected]> Co-authored-by: Xianda Sun <[email protected]> Co-authored-by: Cameron Pfiffer <[email protected]> Co-authored-by: Hong Ge <[email protected]>
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#2039 was mistakenly merged to master. This PR fixes that.