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@yebai yebai commented Jul 27, 2023

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CompatHelper Julia and others added 17 commits June 20, 2023 00:28
* Fix testset for external samplers

* Update abstractmcmc.jl
* Update FillArrays compat to 1.4.0

* Update test compat

* Try to enable ReverseDiff tests

* Update Project.toml

* Update Project.toml
* Update Project.toml

* Update Project.toml
* Fix redundant definition of `getstats`

* Update Inference.jl

* Revert "Update Inference.jl"

This reverts commit e4f51c2.

* Bump version

---------

Co-authored-by: Hong Ge <[email protected]>
* Update OptimInterface.jl

* Only run optimisation tests in numerical stage.

* fix function lookup after moving functions

---------

Co-authored-by: Xianda Sun <[email protected]>
* Move Optim support to extension

* More imports

* Update Project.toml

---------

Co-authored-by: Hong Ge <[email protected]>
@yebai yebai merged commit 74869f4 into MH_constructor Jul 27, 2023
@yebai yebai deleted the new_bijector branch July 27, 2023 17:27
@yebai yebai mentioned this pull request Jul 27, 2023
yebai added a commit that referenced this pull request Aug 16, 2023
* first draft

* abstractcontext + tests

* bug

* externalsampler() in tests

* Name Tupple problems

* moving stuff to DynamicPPL RP

* using new DynamicPPL PR

* mistakenly removed line

* specific constructors

* no StaticMH RWMH

* Bump bijectors compat (#2052)

* CompatHelper: bump compat for Bijectors to 0.13, (keep existing compat)

* Update Project.toml

* Replacement for #2039 (#2040)

* Fix testset for external samplers

* Update abstractmcmc.jl

* Update test/contrib/inference/abstractmcmc.jl

Co-authored-by: Tor Erlend Fjelde <[email protected]>

* Update test/contrib/inference/abstractmcmc.jl

Co-authored-by: Tor Erlend Fjelde <[email protected]>

* Update FillArrays compat to 1.4.1 (#2035)

* Update FillArrays compat to 1.4.0

* Update test compat

* Try to enable ReverseDiff tests

* Update Project.toml

* Update Project.toml

* Bump version

* Revert dependencies on FillArrays (#2042)

* Update Project.toml

* Update Project.toml

* Fix redundant definition of `getstats` (#2044)

* Fix redundant definition of `getstats`

* Update Inference.jl

* Revert "Update Inference.jl"

This reverts commit e4f51c2.

* Bump version

---------

Co-authored-by: Hong Ge <[email protected]>

* Transfer some test utility function into DynamicPPL (#2049)

* Update OptimInterface.jl

* Only run optimisation tests in numerical stage.

* fix function lookup after moving functions

---------

Co-authored-by: Xianda Sun <[email protected]>

* Move Optim support to extension (#2051)

* Move Optim support to extension

* More imports

* Update Project.toml

---------

Co-authored-by: Hong Ge <[email protected]>

---------

Co-authored-by: CompatHelper Julia <[email protected]>
Co-authored-by: haris organtzidis <[email protected]>
Co-authored-by: Tor Erlend Fjelde <[email protected]>
Co-authored-by: David Widmann <[email protected]>
Co-authored-by: Xianda Sun <[email protected]>
Co-authored-by: Cameron Pfiffer <[email protected]>

* Bugfixes.

* Add TODO.

* Update mh.jl

* Update Inference.jl

* Removed obsolete exports.

* removed unnecessary import of extract_priors

* added missing ) in MH tests

* fixed incorrect referneces to AdvancedMH in tests

* improve ESLogDensityFunction

* remove hardcoding of SimpleVarInfo

* added fixme comment

* minor style changes

* fixed issues with MH with RandomWalkProposal being used as an external sampler

* fixed accidental typo

* move definitions of unflatten for NamedTuple

* improved TODO

* Update Project.toml

---------

Co-authored-by: Hong Ge <[email protected]>
Co-authored-by: CompatHelper Julia <[email protected]>
Co-authored-by: haris organtzidis <[email protected]>
Co-authored-by: Tor Erlend Fjelde <[email protected]>
Co-authored-by: David Widmann <[email protected]>
Co-authored-by: Xianda Sun <[email protected]>
Co-authored-by: Cameron Pfiffer <[email protected]>
Co-authored-by: Hong Ge <[email protected]>
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6 participants