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@yhuai yhuai commented Apr 30, 2015

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guowei2 and others added 30 commits April 24, 2015 10:04
fix typo

Author: Ken Geis <[email protected]>

Closes apache#5674 from kgeis/patch-1 and squashes the following commits:

5ae67de [Ken Geis] Update sql-programming-guide.md
Also took the chance to improve documentation for various types.

Author: Reynold Xin <[email protected]>

Closes apache#5675 from rxin/data-type-matching-expr and squashes the following commits:

0f31856 [Reynold Xin] One more function documentation.
27c1973 [Reynold Xin] Added more documentation.
336a36d [Reynold Xin] [SQL] Fixed expression data type matching.
See [SPARK-5894](https://issues.apache.org/jira/browse/SPARK-5894).

Author: Xusen Yin <[email protected]>
Author: Xiangrui Meng <[email protected]>

Closes apache#5245 from yinxusen/SPARK-5894 and squashes the following commits:

dc461a6 [Xusen Yin] merge polynomial expansion v2
6d0c3cc [Xusen Yin] Merge branch 'SPARK-5894' of https://github.com/mengxr/spark into mengxr-SPARK-5894
57bfdd5 [Xusen Yin] Merge branch 'master' into SPARK-5894
3d02a7d [Xusen Yin] Merge branch 'master' into SPARK-5894
a067da2 [Xiangrui Meng] a new approach for poly expansion
0789d81 [Xiangrui Meng] Merge remote-tracking branch 'apache/master' into SPARK-5894
4e9aed0 [Xusen Yin] fix test suite
95d8fb9 [Xusen Yin] fix sparse vector indices
8d39674 [Xusen Yin] fix sparse vector expansion error
5998dd6 [Xusen Yin] fix dense vector fillin
fa3ade3 [Xusen Yin] change the functional code into imperative one to speedup
b70e7e1 [Xusen Yin] remove useless case class
6fa236f [Xusen Yin] fix vector slice error
daff601 [Xusen Yin] fix index error of sparse vector
6bd0a10 [Xusen Yin] merge repeated features
419f8a2 [Xusen Yin] need to merge same columns
4ebf34e [Xusen Yin] add test suite of polynomial expansion
372227c [Xusen Yin] add polynomial expansion
yinxusen

Author: Xiangrui Meng <[email protected]>

Closes apache#5681 from mengxr/SPARK-7115 and squashes the following commits:

9ac27cd [Xiangrui Meng] skip the very first 1 in poly expansion
See [SPARK-6528](https://issues.apache.org/jira/browse/SPARK-6528). Add IDF transformer in ML package.

Author: Xusen Yin <[email protected]>

Closes apache#5266 from yinxusen/SPARK-6528 and squashes the following commits:

741db31 [Xusen Yin] get param from new paramMap
d169967 [Xusen Yin] add final to param and IDF class
c9c3759 [Xusen Yin] simplify test suite
5867c09 [Xusen Yin] refine IDF transformer with new interfaces
7727cae [Xusen Yin] Merge branch 'master' into SPARK-6528
4338a37 [Xusen Yin] Merge branch 'master' into SPARK-6528
aef2cdf [Xusen Yin] add doc and group for param
5760b49 [Xusen Yin] fix code style
2add691 [Xusen Yin] fix code style and test
03fbecb [Xusen Yin] remove duplicated code
2aa4be0 [Xusen Yin] clean test suite
4802c67 [Xusen Yin] add IDF transformer and test suite
…re applicable.

Author: Sun Rui <[email protected]>

Closes apache#5628 from sun-rui/SPARK-7033 and squashes the following commits:

046bc9e [Sun Rui] Clean split usage in tests.
d531c86 [Sun Rui] [SPARK-7033][SPARKR] Clean usage of split. Use partition instead where applicable.
Author: Sun Rui <[email protected]>

Closes apache#5613 from sun-rui/SPARK-6852 and squashes the following commits:

abaf02e [Sun Rui] Change the type of default numPartitions from integer to numeric in generics.R.
29d67c1 [Sun Rui] [SPARK-6852][SPARKR] Accept numeric as numPartitions in SparkR.
This is a reopening of apache#4867.
A short summary of the issues resolved from the previous PR:

1. HTTPClient version mismatch: Selenium (used for UI tests) requires version 4.3.x, and Tachyon included 4.2.5 through a transitive dependency of its shaded thrift jar. To address this, Tachyon 0.6.3 will promote the transitive dependencies of the shaded jar so they can be excluded in spark.

2. Jackson-Mapper-ASL version mismatch: In lower versions of hadoop-client (ie. 1.0.4), version 1.0.1 is included. The parquet library used in spark sql requires version 1.8+. Its unclear to me why upgrading tachyon-client would cause this dependency to break. The solution was to exclude jackson-mapper-asl from hadoop-client.

It seems that the dependency management in spark-parent will not work on transitive dependencies, one way to make sure jackson-mapper-asl is included with the correct version is to add it as a top level dependency. The best solution would be to exclude the dependency in the modules which require a higher version, but that did not fix the unit tests. Any suggestions on the best way to solve this would be appreciated!

Author: Calvin Jia <[email protected]>

Closes apache#5354 from calvinjia/upgrade_tachyon_0.6.3 and squashes the following commits:

0eefe4d [Calvin Jia] Handle httpclient version in maven dependency management. Remove httpclient version setting from profiles.
7c00dfa [Calvin Jia] Set httpclient version to 4.3.2 for selenium. Specify version of httpclient for sql/hive (previously 4.2.5 transitive dependency of libthrift).
9263097 [Calvin Jia] Merge master to test latest changes
dbfc1bd [Calvin Jia] Use Tachyon 0.6.4 for cleaner dependencies.
e2ff80a [Calvin Jia] Exclude the jetty and curator promoted dependencies from tachyon-client.
a3a29da [Calvin Jia] Update tachyon-client exclusions.
0ae6c97 [Calvin Jia] Change tachyon version to 0.6.3
a204df9 [Calvin Jia] Update make distribution tachyon version.
a93c94f [Calvin Jia] Exclude jackson-mapper-asl from hadoop client since it has a lower version than spark's expected version.
a8a923c [Calvin Jia] Exclude httpcomponents from Tachyon
910fabd [Calvin Jia] Update to master
eed9230 [Calvin Jia] Update tachyon version to 0.6.1.
11907b3 [Calvin Jia] Use TachyonURI for tachyon paths instead of strings.
71bf441 [Calvin Jia] Upgrade Tachyon client version to 0.6.0.
To run Spark, default will read file from HDFS if we don't set the schema.

Author: linweizhong <[email protected]>

Closes apache#5684 from Sephiroth-Lin/pyspark_example_minor and squashes the following commits:

19fe145 [linweizhong] Update example sql.py, so that can read file correctly
JoshRosen and others added 22 commits April 29, 2015 13:31
…are inherited from parent threads

When a job is submitted with a job group and that job group is inherited from a parent thread, there are multiple bugs that may prevent this job from being cancelable via `SparkContext.cancelJobGroup()`:

- When filtering jobs based on their job group properties, DAGScheduler calls `get()` instead of `getProperty()`, which does not respect inheritance, so it will skip over jobs whose job group properties were inherited.
- `Properties` objects are mutable, but we do not make defensive copies / snapshots, so modifications of the parent thread's job group will cause running jobs' groups to change; this also breaks cancelation.

Both of these issues are easy to fix: use `getProperty()` and perform defensive copying.

Author: Josh Rosen <[email protected]>

Closes apache#5288 from JoshRosen/localProperties-mutability-race and squashes the following commits:

9e29654 [Josh Rosen] Fix style issue
5d90750 [Josh Rosen] Merge remote-tracking branch 'origin/master' into localProperties-mutability-race
3f7b9e8 [Josh Rosen] Add JIRA reference; move clone into DAGScheduler
707e417 [Josh Rosen] Clone local properties to prevent mutations from breaking job cancellation.
b376114 [Josh Rosen] Fix bug that prevented jobs with inherited job group properties from being cancelled.
…ssed the model, removed the correction terms in LinearRegression with ElasticNet

Added detailed mathematical derivation of how scaling and LeastSquaresAggregator work. Refactored the code so the model is compressed based on the storage. We may try compression based on the prediction time.

Also, I found that diffSum will be always zero mathematically, so no corrections are required.

Author: DB Tsai <[email protected]>

Closes apache#5767 from dbtsai/lir-doc and squashes the following commits:

5e346c9 [DB Tsai] refactoring
fc9f582 [DB Tsai] doc
58456d8 [DB Tsai] address feedback
69757b8 [DB Tsai] actually diffSum is mathematically zero! No correction is needed.
5929e49 [DB Tsai] typo
63f7d1e [DB Tsai] Added compression to the model based on storage
203a295 [DB Tsai] Add more documentation to LinearRegression in new ML framework.
See JIRA issue [here](https://issues.apache.org/jira/browse/SPARK-6529).

There are some notes:

1. I add `learningRate` in sharedParams since it is a common parameter for ML algorithms.
2. We will not support transform of finding synonyms from a `Vector`, which will support in further JIRA issues.
3. Word2Vec is different with other ML models that its training set and transformed set are different. Its training set is an `RDD[Iterable[String]]` which represents documents, but the transformed set we want is an `RDD[String]` that represents unique words. So you have to switch your `inputCol` in these two stages.

Author: Xusen Yin <[email protected]>

Closes apache#5596 from yinxusen/SPARK-6529 and squashes the following commits:

ee2b37a [Xusen Yin] merge with former HEAD
4945462 [Xusen Yin] merge with apache#5626
3bc2cbd [Xusen Yin] change foldLeft to for loop and use blas
5dd4ee7 [Xusen Yin] fix scala style
743e0d5 [Xusen Yin] fix comments and code style
04c48e9 [Xusen Yin] ensure the functionality
a190f2c [Xusen Yin] fix code style and refine the transform function of word2vec
02848fa [Xusen Yin] refine comments
34a55c0 [Xusen Yin] fix errors
109d124 [Xusen Yin] add test suite and pass it
04dde06 [Xusen Yin] add shared params
c594095 [Xusen Yin] add word2vec transformer
23d77fa [Xusen Yin] merge with apache#5626
e8cfaf7 [Xusen Yin] fix conflict with master
66e7bd3 [Xusen Yin] change foldLeft to for loop and use blas
566ec20 [Xusen Yin] fix scala style
b54399f [Xusen Yin] fix comments and code style
1211e86 [Xusen Yin] ensure the functionality
6b97ec8 [Xusen Yin] fix code style and refine the transform function of word2vec
7cde18f [Xusen Yin] rm sharedParams
618abd0 [Xusen Yin] refine comments
e29680a [Xusen Yin] fix errors
fe3afe9 [Xusen Yin] add test suite and pass it
02767fb [Xusen Yin] add shared params
6a514f1 [Xusen Yin] add word2vec transformer
This is built on top of kaka1992 's PR apache#5711 using Logical plans.

Author: Burak Yavuz <[email protected]>

Closes apache#5761 from brkyvz/random-sample and squashes the following commits:

a1fb0aa [Burak Yavuz] remove unrelated file
69669c3 [Burak Yavuz] fix broken test
1ddb3da [Burak Yavuz] copy base
6000328 [Burak Yavuz] added python api and fixed test
3c11d1b [Burak Yavuz] fixed broken test
f400ade [Burak Yavuz] fix build errors
2384266 [Burak Yavuz] addressed comments v0.1
e98ebac [Burak Yavuz] [SPARK-7156][SQL] support RandomSplit in DataFrames
…regation

see [SPARK-7181](https://issues.apache.org/jira/browse/SPARK-7181).

Author: Qiping Li <[email protected]>

Closes apache#5737 from chouqin/externalsorter and squashes the following commits:

2924b93 [Qiping Li] fix inifite loop in Externalsorter's mergeWithAggregation
… list of files as input

See JIRA: https://issues.apache.org/jira/browse/SPARK-7155

SparkContext's newAPIHadoopFile() does not support comma-separated list of files. For example, the following:
```scala
sc.newAPIHadoopFile("/root/file1.txt,/root/file2.txt", classOf[TextInputFormat], classOf[LongWritable], classOf[Text])
```
will throw
```
org.apache.hadoop.mapreduce.lib.input.InvalidInputException: Input path does not exist: file:/root/file1.txt,/root/file2.txt
```
However, the other API hadoopFile() is able to process comma-separated list of files correctly. In addition, since sc.textFile() uses hadoopFile(), it is also able to process comma-separated list of files correctly.

That means the behaviors of hadoopFile() and newAPIHadoopFile() are not aligned.

This pull request fix this issue and allows newAPIHadoopFile() to support comma-separated list of files as input.

A unit test has also been added in SparkContextSuite.scala. It creates two temporary text files as the input and tested against sc.textFile(), sc.hadoopFile(), and sc.newAPIHadoopFile().

Note: The contribution is my original work and that I license the work to the project under the project's open source license.

Author: yongtang <[email protected]>

Closes apache#5708 from yongtang/SPARK-7155 and squashes the following commits:

654c80c [yongtang] [SPARK-7155] [CORE] Remove unneeded temp file deletion in unit test as parent dir is already temporary.
26faa6a [yongtang] [SPARK-7155] [CORE] Support comma-separated list of files as input for newAPIHadoopFile, wholeTextFiles, and binaryFiles. Use setInputPaths for consistency.
73e1f16 [yongtang] [SPARK-7155] [CORE] Allow newAPIHadoopFile to support comma-separated list of files as input.
…ernal representation for Date

Author: Cheng Hao <[email protected]>

Closes apache#5772 from chenghao-intel/specific_row and squashes the following commits:

2cd064d [Cheng Hao] scala style issue
60347a2 [Cheng Hao] SpecificMutableRow should take integer type as internal representation for DateType
…t column

Changed VectorIndexer so it does not carry non-ML metadata from the input to the output column.  Removed ml.util.TestingUtils since VectorIndexer was the only use.

CC: mengxr

Author: Joseph K. Bradley <[email protected]>

Closes apache#5789 from jkbradley/vector-indexer-metadata and squashes the following commits:

b28e159 [Joseph K. Bradley] Changed VectorIndexer so it does not carry non-ML metadata from the input to the output column.  Removed ml.util.TestingUtils since VectorIndexer was the only use.
…not right

Print detail query execution info including parsed/analyzed/optimized/Physical plan for query when spak answer is not rignt.

```
Results do not match for query:
== Parsed Logical Plan ==
'Aggregate ['x.str], ['x.str,SUM('x.strCount) AS c1#46]
 'Join Inner, Some(('x.str = 'y.str))
  'UnresolvedRelation [df], Some(x)
  'UnresolvedRelation [df], Some(y)

== Analyzed Logical Plan ==
Aggregate [str#44], [str#44,SUM(strCount#45L) AS c1#46L]
 Join Inner, Some((str#44 = str#51))
  Subquery x
   Subquery df
    Aggregate [str#44], [str#44,COUNT(str#44) AS strCount#45L]
     Project [_1#41 AS int#43,_2#42 AS str#44]
      LocalRelation [_1#41,_2#42], [[1,1],[2,2],[3,3]]
  Subquery y
   Subquery df
    Aggregate [str#51], [str#51,COUNT(str#51) AS strCount#47L]
     Project [_1#41 AS int#50,_2#42 AS str#51]
      LocalRelation [_1#41,_2#42], [[1,1],[2,2],[3,3]]

== Optimized Logical Plan ==
Aggregate [str#44], [str#44,SUM(strCount#45L) AS c1#46L]
 Project [str#44,strCount#45L]
  Join Inner, Some((str#44 = str#51))
   Aggregate [str#44], [str#44,COUNT(str#44) AS strCount#45L]
    LocalRelation [str#44], [[1],[2],[3]]
   Aggregate [str#51], [str#51]
    LocalRelation [str#51], [[1],[2],[3]]

== Physical Plan ==
Aggregate false, [str#44], [str#44,CombineSum(PartialSum#53L) AS c1#46L]
 Aggregate true, [str#44], [str#44,SUM(strCount#45L) AS PartialSum#53L]
  Project [str#44,strCount#45L]
   BroadcastHashJoin [str#44], [str#51], BuildRight
    Aggregate false, [str#44], [str#44,Coalesce(SUM(PartialCount#55L),0) AS strCount#45L]
     Exchange (HashPartitioning [str#44], 5), []
      Aggregate true, [str#44], [str#44,COUNT(str#44) AS PartialCount#55L]
       LocalTableScan [str#44], [[1],[2],[3]]
    Aggregate false, [str#51], [str#51]
     Exchange (HashPartitioning [str#51], 5), []
      Aggregate true, [str#51], [str#51]
       LocalTableScan [str#51], [[1],[2],[3]]

Code Generation: false
== RDD ==
== Results ==
!== Correct Answer - 3 ==   == Spark Answer - 3 ==
 [1,1]                      [1,1]
![2,3]                      [2,1]
 [3,1]                      [3,1]
```

Author: wangfei <[email protected]>

Closes apache#5774 from scwf/checkanswer and squashes the following commits:

5be6f78 [wangfei] print detail query execution info when Spark Answer is not right
Main change: Added isValid field to Param.  Modified all usages to use isValid when relevant.  Added helper methods in ParamValidate.

Also overrode Params.validate() in:
* CrossValidator + model
* Pipeline + model

I made a few updates for the elastic net patch:
* I changed "tol" to "convergenceTol"
* I added some documentation

This PR is Scala + Java only.  Python will be in a follow-up PR.

CC: mengxr

Author: Joseph K. Bradley <[email protected]>

Closes apache#5740 from jkbradley/enforce-validate and squashes the following commits:

ad9c6c1 [Joseph K. Bradley] re-generated sharedParams after merging with current master
76415e8 [Joseph K. Bradley] reverted convergenceTol to tol
af62f4b [Joseph K. Bradley] Removed changes to SparkBuild, python linalg.  Fixed test failures.  Renamed ParamValidate to ParamValidators.  Removed explicit type from ParamValidators calls where possible.
bb2665a [Joseph K. Bradley] merged with elastic net pr
ecda302 [Joseph K. Bradley] fix rat tests, plus add a little doc
6895dfc [Joseph K. Bradley] small cleanups
069ac6d [Joseph K. Bradley] many cleanups
928fb84 [Joseph K. Bradley] Maybe done
a910ac7 [Joseph K. Bradley] still workin
6d60e2e [Joseph K. Bradley] Still workin
b987319 [Joseph K. Bradley] Partly done with adding checks, but blocking on adding checking functionality to Param
dbc9fb2 [Joseph K. Bradley] merged with master.  enforcing Params.validate
…a batch

This is an initial commit for SPARK-6862. Once SPARK-6796 is merged, I will add the links to StreamingPage so that the user can jump to BatchPage.

Screenshots:
![success](https://cloud.githubusercontent.com/assets/1000778/7102439/bbe75406-e0b3-11e4-84fe-3e6de629a49a.png)
![failure](https://cloud.githubusercontent.com/assets/1000778/7102440/bc124454-e0b3-11e4-921a-c8b39d6b61bc.png)

Author: zsxwing <[email protected]>

Closes apache#5473 from zsxwing/SPARK-6862 and squashes the following commits:

0727d35 [zsxwing] Change BatchUIData to a case class
b380cfb [zsxwing] Add createJobStart to eliminate duplicate codes
9a3083d [zsxwing] Rename XxxDatas -> XxxData
087ba98 [zsxwing] Refactor BatchInfo to store only necessary fields
cb62e4f [zsxwing] Use Seq[(OutputOpId, SparkJobId)] to store the id relations
72f8e7e [zsxwing] Add unit tests for BatchPage
1282b10 [zsxwing] Handle some corner cases and add tests for StreamingJobProgressListener
77a69ae [zsxwing] Refactor codes as per TD's comments
35ffd80 [zsxwing] Merge branch 'master' into SPARK-6862
15bdf9b [zsxwing] Add batch links and unit tests
4bf66b6 [zsxwing] Merge branch 'master' into SPARK-6862
7168807 [zsxwing] Limit the max width of the error message and fix nits in the UI
0b226f9 [zsxwing] Change 'Last Error' to 'Error'
fc98a43 [zsxwing] Put clearing local properties to finally and remove redundant private[streaming]
0c7b2eb [zsxwing] Add BatchPage to display details of a batch
Author: 云峤 <[email protected]>

Closes apache#5778 from kaka1992/fix_codegenon_datetype_mismatch and squashes the following commits:

1ad4cff [云峤] SPARK-7234 fix dateType mismatch
small fixes regarding comments in PR apache#5761

cc rxin

Author: Burak Yavuz <[email protected]>

Closes apache#5795 from brkyvz/split-followup and squashes the following commits:

369c522 [Burak Yavuz] changed wording a little
1ea456f [Burak Yavuz] Addressed follow up comments
Author: DB Tsai <[email protected]>

Closes apache#5794 from dbtsai/clean and squashes the following commits:

ad639dd [DB Tsai] Indentation
834d527 [DB Tsai] Some code clean up.
SQL
```
select key from (select key from src limit 100) t2 limit 10
```
Optimized Logical Plan before modifying
```
== Optimized Logical Plan ==
Limit 10
Limit 100
Project key#3
MetastoreRelation default, src, None
```
Optimized Logical Plan after modifying
```
== Optimized Logical Plan ==
Limit 10
 Project [key#1]
  MetastoreRelation default, src, None
```

Author: Zhongshuai Pei <[email protected]>
Author: DoingDone9 <[email protected]>

Closes apache#5770 from DoingDone9/limitOptimizer and squashes the following commits:

c68eaa7 [Zhongshuai Pei] Update CombiningLimitsSuite.scala
97e18cf [Zhongshuai Pei] Update Optimizer.scala
19ab875 [Zhongshuai Pei] Update CombiningLimitsSuite.scala
7db4566 [Zhongshuai Pei] Update CombiningLimitsSuite.scala
e2a491d [Zhongshuai Pei] Update Optimizer.scala
f03fe7f [Zhongshuai Pei] Merge pull request apache#12 from apache/master
f12fa50 [Zhongshuai Pei] Merge pull request apache#10 from apache/master
f61210c [Zhongshuai Pei] Merge pull request apache#9 from apache/master
34b1a9a [Zhongshuai Pei] Merge pull request apache#8 from apache/master
802261c [DoingDone9] Merge pull request apache#7 from apache/master
d00303b [DoingDone9] Merge pull request apache#6 from apache/master
98b134f [DoingDone9] Merge pull request #5 from apache/master
161cae3 [DoingDone9] Merge pull request #4 from apache/master
c87e8b6 [DoingDone9] Merge pull request #3 from apache/master
cb1852d [DoingDone9] Merge pull request #2 from apache/master
c3f046f [DoingDone9] Merge pull request #1 from apache/master
See PDF attached to the JIRA issue 1406.

The contribution is my original work and I license the work to the project under the project's open source license.

Author: Vincenzo Selvaggio <[email protected]>
Author: Xiangrui Meng <[email protected]>
Author: selvinsource <[email protected]>

Closes apache#3062 from selvinsource/mllib_pmml_model_export_SPARK-1406 and squashes the following commits:

852aac6 [Vincenzo Selvaggio] [SPARK-1406] Update JPMML version to 1.1.15 in LICENSE file
085cf42 [Vincenzo Selvaggio] [SPARK-1406] Added Double Min and Max Fixed scala style
30165c4 [Vincenzo Selvaggio] [SPARK-1406] Fixed extreme cases for logit
7a5e0ec [Vincenzo Selvaggio] [SPARK-1406] Binary classification for SVM and Logistic Regression
cfcb596 [Vincenzo Selvaggio] [SPARK-1406] Throw IllegalArgumentException when exporting a multinomial logistic regression
25dce33 [Vincenzo Selvaggio] [SPARK-1406] Update code to latest pmml model
dea98ca [Vincenzo Selvaggio] [SPARK-1406] Exclude transitive dependency for pmml model
66b7c12 [Vincenzo Selvaggio] [SPARK-1406] Updated pmml model lib to 1.1.15, latest Java 6 compatible
a0a55f7 [Vincenzo Selvaggio] Merge pull request #2 from mengxr/SPARK-1406
3c22f79 [Xiangrui Meng] more code style
e2313df [Vincenzo Selvaggio] Merge pull request #1 from mengxr/SPARK-1406
472d757 [Xiangrui Meng] fix code style
1676e15 [Vincenzo Selvaggio] fixed scala issue
e2ffae8 [Vincenzo Selvaggio] fixed scala style
b8823b0 [Vincenzo Selvaggio] Merge remote-tracking branch 'upstream/master' into mllib_pmml_model_export_SPARK-1406
b25bbf7 [Vincenzo Selvaggio] [SPARK-1406] Added export of pmml to distributed file system using the spark context
7a949d0 [Vincenzo Selvaggio] [SPARK-1406] Fixed scala style
f46c75c [Vincenzo Selvaggio] [SPARK-1406] Added PMMLExportable to supported models
7b33b4e [Vincenzo Selvaggio] [SPARK-1406] Added a PMMLExportable interface Restructured code in a new package mllib.pmml Supported models implements the new PMMLExportable interface: LogisticRegression, SVM, KMeansModel, LinearRegression, RidgeRegression, Lasso
d559ec5 [Vincenzo Selvaggio] Merge remote-tracking branch 'upstream/master' into mllib_pmml_model_export_SPARK-1406
8fe12bb [Vincenzo Selvaggio] [SPARK-1406] Adjusted logistic regression export description and target categories
03bc3a5 [Vincenzo Selvaggio] added logistic regression
da2ec11 [Vincenzo Selvaggio] [SPARK-1406] added linear SVM PMML export
82f2131 [Vincenzo Selvaggio] Merge remote-tracking branch 'upstream/master' into mllib_pmml_model_export_SPARK-1406
19adf29 [Vincenzo Selvaggio] [SPARK-1406] Fixed scala style
1faf985 [Vincenzo Selvaggio] [SPARK-1406] Added target field to the regression model for completeness Adjusted unit test to deal with this change
3ae8ae5 [Vincenzo Selvaggio] [SPARK-1406] Adjusted imported order according to the guidelines
c67ce81 [Vincenzo Selvaggio] Merge remote-tracking branch 'upstream/master' into mllib_pmml_model_export_SPARK-1406
78515ec [Vincenzo Selvaggio] [SPARK-1406] added pmml export for LinearRegressionModel, RidgeRegressionModel and LassoModel
e29dfb9 [Vincenzo Selvaggio] removed version, by default is set to 4.2 (latest from jpmml) removed copyright
ae8b993 [Vincenzo Selvaggio] updated some commented tests to use the new ModelExporter object reordered the imports
df8a89e [Vincenzo Selvaggio] added pmml version to pmml model changed the copyright to spark
a1b4dc3 [Vincenzo Selvaggio] updated imports
834ca44 [Vincenzo Selvaggio] reordered the import accordingly to the guidelines
349a76b [Vincenzo Selvaggio] new helper object to serialize the models to pmml format
c3ef9b8 [Vincenzo Selvaggio] set it to private
6357b98 [Vincenzo Selvaggio] set it to private
e1eb251 [Vincenzo Selvaggio] removed serialization part, this will be part of the ModelExporter helper object
aba5ee1 [Vincenzo Selvaggio] fixed cluster export
cd6c07c [Vincenzo Selvaggio] fixed scala style to run tests
f75b988 [Vincenzo Selvaggio] Merge remote-tracking branch 'origin/master' into mllib_pmml_model_export_SPARK-1406
07a29bf [selvinsource] Update LICENSE
8841439 [Vincenzo Selvaggio] adjust scala style in order to compile
1433b11 [Vincenzo Selvaggio] complete suite tests
8e71b8d [Vincenzo Selvaggio] kmeans pmml export implementation
9bc494f [Vincenzo Selvaggio] added scala suite tests added saveLocalFile to ModelExport trait
226e184 [Vincenzo Selvaggio] added javadoc and export model type in case there is a need to support other types of export (not just PMML)
a0e3679 [Vincenzo Selvaggio] export and pmml export traits kmeans test implementation
Conflicts:
	sql/core/src/main/scala/org/apache/spark/sql/execution/SparkStrategies.scala
	sql/hive/src/main/scala/org/apache/spark/sql/hive/HiveQl.scala
@yhuai yhuai closed this May 1, 2015
yhuai pushed a commit that referenced this pull request May 1, 2015
SQL
```
select key from (select key,value from t1 limit 100) t2 limit 10
```
Optimized Logical Plan before modifying
```
== Optimized Logical Plan ==
Limit 10
  Project key#228
    Limit 100
      MetastoreRelation default, t1, None
```
Optimized Logical Plan after modifying
```
== Optimized Logical Plan ==
Limit 10
  Limit 100
    Project key#228
      MetastoreRelation default, t1, None
```
After this, we can combine limits

Author: Zhongshuai Pei <[email protected]>
Author: DoingDone9 <[email protected]>

Closes apache#5797 from DoingDone9/ProjectLimit and squashes the following commits:

70d0fca [Zhongshuai Pei] Update FilterPushdownSuite.scala
dc83ae9 [Zhongshuai Pei] Update FilterPushdownSuite.scala
485c61c [Zhongshuai Pei] Update Optimizer.scala
f03fe7f [Zhongshuai Pei] Merge pull request apache#12 from apache/master
f12fa50 [Zhongshuai Pei] Merge pull request apache#10 from apache/master
f61210c [Zhongshuai Pei] Merge pull request apache#9 from apache/master
34b1a9a [Zhongshuai Pei] Merge pull request apache#8 from apache/master
802261c [DoingDone9] Merge pull request apache#7 from apache/master
d00303b [DoingDone9] Merge pull request apache#6 from apache/master
98b134f [DoingDone9] Merge pull request #5 from apache/master
161cae3 [DoingDone9] Merge pull request #4 from apache/master
c87e8b6 [DoingDone9] Merge pull request #3 from apache/master
cb1852d [DoingDone9] Merge pull request #2 from apache/master
c3f046f [DoingDone9] Merge pull request #1 from apache/master
guowei2 pushed a commit that referenced this pull request May 12, 2015
JIRA issue [here](https://issues.apache.org/jira/browse/SPARK-5893).

One thing to make clear, the `buckets` parameter, which is an array of `Double`, performs as split points. Say,

```scala
buckets = Array(-0.5, 0.0, 0.5)
```

splits the real number into 4 ranges, (-inf, -0.5], (-0.5, 0.0], (0.0, 0.5], (0.5, +inf), which is encoded as 0, 1, 2, 3.

Author: Xusen Yin <[email protected]>
Author: Joseph K. Bradley <[email protected]>

Closes apache#5980 from yinxusen/SPARK-5893 and squashes the following commits:

dc8c843 [Xusen Yin] Merge pull request #4 from jkbradley/yinxusen-SPARK-5893
1ca973a [Joseph K. Bradley] one more bucketizer test
34f124a [Joseph K. Bradley] Removed lowerInclusive, upperInclusive params from Bucketizer, and used splits instead.
eacfcfa [Xusen Yin] change ML attribute from splits into buckets
c3cc770 [Xusen Yin] add more unit test for binary search
3a16cc2 [Xusen Yin] refine comments and names
ac77859 [Xusen Yin] fix style error
fb30d79 [Xusen Yin] fix and test binary search
2466322 [Xusen Yin] refactor Bucketizer
11fb00a [Xusen Yin] change it into an Estimator
998bc87 [Xusen Yin] check buckets
4024cf1 [Xusen Yin] add test suite
5fe190e [Xusen Yin] add bucketizer
guowei2 pushed a commit that referenced this pull request May 12, 2015
…" into true or false directly

SQL
```
select key from src where 3 in (4, 5);
```
Before
```
== Optimized Logical Plan ==
Project [key#12]
 Filter 3 INSET (5,4)
  MetastoreRelation default, src, None
```

After
```
== Optimized Logical Plan ==
LocalRelation [key#228], []
```

Author: Zhongshuai Pei <[email protected]>
Author: DoingDone9 <[email protected]>

Closes apache#5972 from DoingDone9/InToFalse and squashes the following commits:

4c722a2 [Zhongshuai Pei] Update predicates.scala
abe2bbb [Zhongshuai Pei] Update Optimizer.scala
fa461a5 [Zhongshuai Pei] Update Optimizer.scala
e34c28a [Zhongshuai Pei] Update predicates.scala
24739bd [Zhongshuai Pei] Update ConstantFoldingSuite.scala
f4dbf50 [Zhongshuai Pei] Update ConstantFoldingSuite.scala
35ceb7a [Zhongshuai Pei] Update Optimizer.scala
36c194e [Zhongshuai Pei] Update Optimizer.scala
2e8f6ca [Zhongshuai Pei] Update Optimizer.scala
14952e2 [Zhongshuai Pei] Merge pull request apache#13 from apache/master
f03fe7f [Zhongshuai Pei] Merge pull request apache#12 from apache/master
f12fa50 [Zhongshuai Pei] Merge pull request apache#10 from apache/master
f61210c [Zhongshuai Pei] Merge pull request apache#9 from apache/master
34b1a9a [Zhongshuai Pei] Merge pull request apache#8 from apache/master
802261c [DoingDone9] Merge pull request apache#7 from apache/master
d00303b [DoingDone9] Merge pull request apache#6 from apache/master
98b134f [DoingDone9] Merge pull request #5 from apache/master
161cae3 [DoingDone9] Merge pull request #4 from apache/master
c87e8b6 [DoingDone9] Merge pull request #3 from apache/master
cb1852d [DoingDone9] Merge pull request #2 from apache/master
c3f046f [DoingDone9] Merge pull request #1 from apache/master
guowei2 pushed a commit that referenced this pull request Jun 16, 2015
…into a single batch.

SQL
```
select * from tableA join tableB on (a > 3 and b = d) or (a > 3 and b = e)
```
Plan before modify
```
== Optimized Logical Plan ==
Project [a#293,b#294,c#295,d#296,e#297]
 Join Inner, Some(((a#293 > 3) && ((b#294 = d#296) || (b#294 = e#297))))
  MetastoreRelation default, tablea, None
  MetastoreRelation default, tableb, None
```
Plan after modify
```
== Optimized Logical Plan ==
Project [a#293,b#294,c#295,d#296,e#297]
 Join Inner, Some(((b#294 = d#296) || (b#294 = e#297)))
  Filter (a#293 > 3)
   MetastoreRelation default, tablea, None
  MetastoreRelation default, tableb, None
```

CombineLimits ==> Limit(If(LessThan(ne, le), ne, le), grandChild) and LessThan is in BooleanSimplification ,  so CombineLimits  must before BooleanSimplification and BooleanSimplification must before PushPredicateThroughJoin.

Author: Zhongshuai Pei <[email protected]>
Author: DoingDone9 <[email protected]>

Closes apache#6351 from DoingDone9/master and squashes the following commits:

20de7be [Zhongshuai Pei] Update Optimizer.scala
7bc7d28 [Zhongshuai Pei] Merge pull request apache#17 from apache/master
0ba5f42 [Zhongshuai Pei] Update Optimizer.scala
f8b9314 [Zhongshuai Pei] Update FilterPushdownSuite.scala
c529d9f [Zhongshuai Pei] Update FilterPushdownSuite.scala
ae3af6d [Zhongshuai Pei] Update FilterPushdownSuite.scala
a04ffae [Zhongshuai Pei] Update Optimizer.scala
11beb61 [Zhongshuai Pei] Update FilterPushdownSuite.scala
f2ee5fe [Zhongshuai Pei] Update Optimizer.scala
be6b1d5 [Zhongshuai Pei] Update Optimizer.scala
b01e622 [Zhongshuai Pei] Merge pull request apache#15 from apache/master
8df716a [Zhongshuai Pei] Update FilterPushdownSuite.scala
d98bc35 [Zhongshuai Pei] Update FilterPushdownSuite.scala
fa65718 [Zhongshuai Pei] Update Optimizer.scala
ab8e9a6 [Zhongshuai Pei] Merge pull request apache#14 from apache/master
14952e2 [Zhongshuai Pei] Merge pull request apache#13 from apache/master
f03fe7f [Zhongshuai Pei] Merge pull request apache#12 from apache/master
f12fa50 [Zhongshuai Pei] Merge pull request apache#10 from apache/master
f61210c [Zhongshuai Pei] Merge pull request apache#9 from apache/master
34b1a9a [Zhongshuai Pei] Merge pull request apache#8 from apache/master
802261c [DoingDone9] Merge pull request apache#7 from apache/master
d00303b [DoingDone9] Merge pull request apache#6 from apache/master
98b134f [DoingDone9] Merge pull request #5 from apache/master
161cae3 [DoingDone9] Merge pull request #4 from apache/master
c87e8b6 [DoingDone9] Merge pull request #3 from apache/master
cb1852d [DoingDone9] Merge pull request #2 from apache/master
c3f046f [DoingDone9] Merge pull request #1 from apache/master
guowei2 pushed a commit that referenced this pull request Jul 6, 2015
JIRA issue [here](https://issues.apache.org/jira/browse/SPARK-5893).

One thing to make clear, the `buckets` parameter, which is an array of `Double`, performs as split points. Say,

```scala
buckets = Array(-0.5, 0.0, 0.5)
```

splits the real number into 4 ranges, (-inf, -0.5], (-0.5, 0.0], (0.0, 0.5], (0.5, +inf), which is encoded as 0, 1, 2, 3.

Author: Xusen Yin <[email protected]>
Author: Joseph K. Bradley <[email protected]>

Closes apache#5980 from yinxusen/SPARK-5893 and squashes the following commits:

dc8c843 [Xusen Yin] Merge pull request #4 from jkbradley/yinxusen-SPARK-5893
1ca973a [Joseph K. Bradley] one more bucketizer test
34f124a [Joseph K. Bradley] Removed lowerInclusive, upperInclusive params from Bucketizer, and used splits instead.
eacfcfa [Xusen Yin] change ML attribute from splits into buckets
c3cc770 [Xusen Yin] add more unit test for binary search
3a16cc2 [Xusen Yin] refine comments and names
ac77859 [Xusen Yin] fix style error
fb30d79 [Xusen Yin] fix and test binary search
2466322 [Xusen Yin] refactor Bucketizer
11fb00a [Xusen Yin] change it into an Estimator
998bc87 [Xusen Yin] check buckets
4024cf1 [Xusen Yin] add test suite
5fe190e [Xusen Yin] add bucketizer

(cherry picked from commit 35fb42a)
Signed-off-by: Joseph K. Bradley <[email protected]>
guowei2 pushed a commit that referenced this pull request Jul 6, 2015
…" into true or false directly

SQL
```
select key from src where 3 in (4, 5);
```
Before
```
== Optimized Logical Plan ==
Project [key#12]
 Filter 3 INSET (5,4)
  MetastoreRelation default, src, None
```

After
```
== Optimized Logical Plan ==
LocalRelation [key#228], []
```

Author: Zhongshuai Pei <[email protected]>
Author: DoingDone9 <[email protected]>

Closes apache#5972 from DoingDone9/InToFalse and squashes the following commits:

4c722a2 [Zhongshuai Pei] Update predicates.scala
abe2bbb [Zhongshuai Pei] Update Optimizer.scala
fa461a5 [Zhongshuai Pei] Update Optimizer.scala
e34c28a [Zhongshuai Pei] Update predicates.scala
24739bd [Zhongshuai Pei] Update ConstantFoldingSuite.scala
f4dbf50 [Zhongshuai Pei] Update ConstantFoldingSuite.scala
35ceb7a [Zhongshuai Pei] Update Optimizer.scala
36c194e [Zhongshuai Pei] Update Optimizer.scala
2e8f6ca [Zhongshuai Pei] Update Optimizer.scala
14952e2 [Zhongshuai Pei] Merge pull request apache#13 from apache/master
f03fe7f [Zhongshuai Pei] Merge pull request apache#12 from apache/master
f12fa50 [Zhongshuai Pei] Merge pull request apache#10 from apache/master
f61210c [Zhongshuai Pei] Merge pull request apache#9 from apache/master
34b1a9a [Zhongshuai Pei] Merge pull request apache#8 from apache/master
802261c [DoingDone9] Merge pull request apache#7 from apache/master
d00303b [DoingDone9] Merge pull request apache#6 from apache/master
98b134f [DoingDone9] Merge pull request #5 from apache/master
161cae3 [DoingDone9] Merge pull request #4 from apache/master
c87e8b6 [DoingDone9] Merge pull request #3 from apache/master
cb1852d [DoingDone9] Merge pull request #2 from apache/master
c3f046f [DoingDone9] Merge pull request #1 from apache/master

(cherry picked from commit 4b5e1fe)
Signed-off-by: Michael Armbrust <[email protected]>
guowei2 pushed a commit that referenced this pull request Jul 24, 2015
…l operators

This patch introduces `SparkPlanTest`, a base class for unit tests of SparkPlan physical operators.  This is analogous to Spark SQL's existing `QueryTest`, which does something similar for end-to-end tests with actual queries.

These helper methods provide nicer error output when tests fail and help developers to avoid writing lots of boilerplate in order to execute manually constructed physical plans.

Author: Josh Rosen <[email protected]>
Author: Josh Rosen <[email protected]>
Author: Michael Armbrust <[email protected]>

Closes apache#6885 from JoshRosen/spark-plan-test and squashes the following commits:

f8ce275 [Josh Rosen] Fix some IntelliJ inspections and delete some dead code
84214be [Josh Rosen] Add an extra column which isn't part of the sort
ae1896b [Josh Rosen] Provide implicits automatically
a80f9b0 [Josh Rosen] Merge pull request #4 from marmbrus/pr/6885
d9ab1e4 [Michael Armbrust] Add simple resolver
c60a44d [Josh Rosen] Manually bind references
996332a [Josh Rosen] Add types so that tests compile
a46144a [Josh Rosen] WIP
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