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@larsoner larsoner commented Oct 7, 2025

Debugging the VTK failure remotely as I could not replicate it locally

@larsoner larsoner requested a review from drammock as a code owner October 7, 2025 16:13
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larsoner commented Oct 8, 2025

Upstream issue and PR made

https://gitlab.kitware.com/vtk/vtk/-/merge_requests/12513

Fix should hopefully land in a nightly soon. I'll leave this open in the meantime so I can push a commit to restore the nightly once it lands

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Fixed upstream now we just need to wait for https://gitlab.kitware.com/api/v4/projects/13/packages/pypi/simple/vtk to have newer wheels

* upstream/main: (23 commits)
  ENH: Add on_missing for combine_channels (mne-tools#13463)
  Bump the actions group with 2 updates (mne-tools#13464)
  Move development dependencies into a dependency group (no more extra) (mne-tools#13452)
  ENH: add on_missing for rename_channels (mne-tools#13456)
  add advisory board to website (mne-tools#13462)
  ENH: Support Nihon Kohden EEG-1200A V01.00 (mne-tools#13448)
  MAINT: Update dependency specifiers (mne-tools#13459)
  ENH: Add encoding parameter to Nihon Kohden reader (mne-tools#13458)
  [MAINT] Automatic SPEC0 dependency version management (mne-tools#13451)
  FIX: Read Nihon Kohden annotation file accurately (mne-tools#13251)
  MAINT: Restore edfio git install (mne-tools#13421)
  Support preload=False for the new EEGLAB single .set format (mne-tools#13096)
  [pre-commit.ci] pre-commit autoupdate (mne-tools#13453)
  MAINT: Restore PySide6 6.10.0 testing (mne-tools#13446)
  MAINT: Auth [skip azp] [skip actions]
  MAINT: Deploy [circle deploy] [skip azp] [skip actions]
  Bump github/codeql-action from 3 to 4 in the actions group (mne-tools#13442)
  ENH: Dont constrain fiducial clicks to mesh vertices (mne-tools#13445)
  Use timezone-aware ISO 8601 for website timestamp (mne-tools#13347)
  [pre-commit.ci] pre-commit autoupdate (mne-tools#13443)
  ...
@larsoner larsoner changed the title TST: Test VTK failure MAINT: Restore VTK nightly wheel on Linux and bump changelog checker Oct 27, 2025
@larsoner larsoner enabled auto-merge (squash) October 27, 2025 17:58
@larsoner larsoner merged commit f7df4e5 into mne-tools:main Oct 28, 2025
32 checks passed
@larsoner larsoner deleted the check branch October 28, 2025 16:00
larsoner added a commit to BeiGeJin/mne-python that referenced this pull request Nov 5, 2025
* upstream/main: (230 commits)
  FIX: Fix ICA.apply when fitted including marked bad channels (mne-tools#13478)
  FIX: Correctly set the calibration factor in Nihon Kohden reader (mne-tools#13468)
  [pre-commit.ci] pre-commit autoupdate (mne-tools#13479)
  MAINT: Update code credit (mne-tools#13477)
  Fix `versionadded` directive formatting (mne-tools#13471)
  typo in mailmap (mne-tools#13475)
  FIX: Fix _plot_topomap channel names plotting when using a mask (mne-tools#13470)
  FIX: Handle an Eyelink File with blank lines injected throughout file (mne-tools#13469)
  ENH: adds annotation filtering to raw and ica source figures (mne-tools#13460)
  MAINT: Restore VTK nightly wheel on Linux and bump changelog checker (mne-tools#13436)
  [pre-commit.ci] pre-commit autoupdate (mne-tools#13465)
  FIX: Fix add_reference_channels for passing two channels names (mne-tools#13466)
  ENH: Add on_missing for combine_channels (mne-tools#13463)
  Bump the actions group with 2 updates (mne-tools#13464)
  Move development dependencies into a dependency group (no more extra) (mne-tools#13452)
  ENH: add on_missing for rename_channels (mne-tools#13456)
  add advisory board to website (mne-tools#13462)
  ENH: Support Nihon Kohden EEG-1200A V01.00 (mne-tools#13448)
  MAINT: Update dependency specifiers (mne-tools#13459)
  ENH: Add encoding parameter to Nihon Kohden reader (mne-tools#13458)
  ...
larsoner added a commit to szz-dvl/mne-python that referenced this pull request Nov 5, 2025
* upstream/main: (85 commits)
  FIX: Fix ICA.apply when fitted including marked bad channels (mne-tools#13478)
  FIX: Correctly set the calibration factor in Nihon Kohden reader (mne-tools#13468)
  [pre-commit.ci] pre-commit autoupdate (mne-tools#13479)
  MAINT: Update code credit (mne-tools#13477)
  Fix `versionadded` directive formatting (mne-tools#13471)
  typo in mailmap (mne-tools#13475)
  FIX: Fix _plot_topomap channel names plotting when using a mask (mne-tools#13470)
  FIX: Handle an Eyelink File with blank lines injected throughout file (mne-tools#13469)
  ENH: adds annotation filtering to raw and ica source figures (mne-tools#13460)
  MAINT: Restore VTK nightly wheel on Linux and bump changelog checker (mne-tools#13436)
  [pre-commit.ci] pre-commit autoupdate (mne-tools#13465)
  FIX: Fix add_reference_channels for passing two channels names (mne-tools#13466)
  ENH: Add on_missing for combine_channels (mne-tools#13463)
  Bump the actions group with 2 updates (mne-tools#13464)
  Move development dependencies into a dependency group (no more extra) (mne-tools#13452)
  ENH: add on_missing for rename_channels (mne-tools#13456)
  add advisory board to website (mne-tools#13462)
  ENH: Support Nihon Kohden EEG-1200A V01.00 (mne-tools#13448)
  MAINT: Update dependency specifiers (mne-tools#13459)
  ENH: Add encoding parameter to Nihon Kohden reader (mne-tools#13458)
  ...
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